DreEX0024220 @ danRer10
Exon Skipping
Gene
ENSDARG00000104148 | crebbpb
Description
CREB binding protein b [Source:ZFIN;Acc:ZDB-GENE-050302-102]
Coordinates
chr3:9686711-9689247:-
Coord C1 exon
chr3:9689065-9689247
Coord A exon
chr3:9686983-9687312
Coord C2 exon
chr3:9686711-9686884
Length
330 bp
Sequences
Splice sites
3' ss Seq
CTCCGTCTCTCCCCCTCTAGCAG
3' ss Score
9.91
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
Exon sequences
Seq C1 exon
ATGGTTATGTCTCCTTCCAGAATGCCGCAAGCTCAAGCCATGATGGGAGGACATGCTAATAACATGGTGGGCCAGACACCCAACCAGAACCAGTTCATGAACCAGACACCGTTCCCAGCCTCGGCCGGGGGCATGAATGTGAATGTAAACCTGGCCCAGCAGTCAGGACAGACTGTCCAACAG
Seq A exon
CAGCAGCAGCAGAACGCTAACCTGACCCTGAACGCTGTGGGCTCTCTGGGCCCGCCGTCCGCCCTGTGCTCCACCCCTCCTCCGCCCTCCGCCTCCACCCCGTCAGCCGCTGCCAGCCTGCAGTCACTCCAGACCCAGCCCTCCACGCCAGCCTCCGTCGGGGGCCACGTCACGCCCACCCACATCCCCAGCGGCCTGCCCCGTCCTCCCTCTGTCCTGGGCTCCTCCCCTGCCCCGTCCCAGCCGCACACACCCTTGCAGTCCCAGCCTGAGCCCCCCATGCAGATGCAGCAGCCCACCTCTGTGCAAGCGCAGCAGCCAAGCACTCCG
Seq C2 exon
CTCTCTCAGATGGCTCCCAGTGTTGATAATAGAGTCCCCACGCCTGCTTCTGTGGCTGAGACACACTCCCAGCAGGCCTTGCCTGACTATCCTGCTGCCGAGCCCAAAATCGAGCATCAAGAAGACGAGCAGGAAGTGGAGTCTGGGAAAAAACGGCCCGATATTAAGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104148_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTTCCAGAATGCCGCAAG
R:
CTCCATCTTAATATCGGGCCGT
Band lengths:
347-677
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]