MmuEX6060579 @ mm9
Exon Skipping
Gene
ENSMUSG00000022521 | Crebbp
Description
CREB binding protein [Source:MGI Symbol;Acc:MGI:1098280]
Coordinates
chr16:4115778-4119221:-
Coord C1 exon
chr16:4119033-4119221
Coord A exon
chr16:4117255-4117668
Coord C2 exon
chr16:4115778-4115957
Length
414 bp
Sequences
Splice sites
3' ss Seq
ATTCTTACTATCTCTTTTAGGGT
3' ss Score
9.96
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
ATGGCCATTTCTCCTTCACGGATGCCTCAGCCTCCAAATATGATGGGCACTCATGCCAACAACATTATGGCCCAGGCACCTACTCAGAACCAGTTTCTGCCACAGAACCAGTTTCCATCATCCAGTGGGGCAATGAGTGTGAACAGTGTGGGCATGGGGCAACCAGCAGCCCAGGCAGGTGTTTCACAG
Seq A exon
GGTCAGGTACCTGGAGCTGCTCTCCCTAACCCTCTGAACATGCTGGCACCCCAGGCCAGCCAGCTGCCTTGCCCACCAGTGACACAGTCACCATTGCACCCGACTCCACCTCCTGCTTCCACAGCTGCTGGCATGCCCTCTCTCCAACATCCAACGGCACCAGGAATGACCCCTCCTCAGCCAGCAGCTCCCACTCAGCCATCTACTCCTGTGTCATCTGGGCAGACTCCTACCCCAACTCCTGGCTCAGTGCCCAGCGCTGCCCAAACACAGAGTACCCCTACAGTCCAGGCAGCAGCACAGGCTCAGGTGACTCCACAGCCTCAGACCCCAGTGCAGCCACCATCTGTGGCTACTCCTCAGTCATCACAGCAGCAACCAACGCCTGTGCATACTCAGCCTCCTGGCACACCG
Seq C2 exon
CTTTCTCAGGCAGCAGCCAGCATTGATAATAGAGTCCCTACTCCCTCCTCTGTGACCAGTGCTGAAACCAGTTCCCAGCAGCCAGGACCCGATGTGCCCATGCTGGAAATGAAGACAGAGGTGCAGACAGATGATGCTGAGCCTGAACCTACTGAATCCAAGGGGGAACCTCGGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022521-'15-15,'15-14,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCCTTCACGGATGCCTCA
R:
AGGTTCCCCCTTGGATTCAGT
Band lengths:
352-766
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: