BtaEX6108384 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002178 | PPL
Description
periplakin [Source:HGNC Symbol;Acc:HGNC:9273]
Coordinates
chr25:3974919-3976637:-
Coord C1 exon
chr25:3976477-3976637
Coord A exon
chr25:3975151-3975329
Coord C2 exon
chr25:3974919-3975057
Length
179 bp
Sequences
Splice sites
3' ss Seq
GAGGGCTCTGGTCCCCACAGAAC
3' ss Score
7.13
5' ss Seq
GAAGTGGGT
5' ss Score
2.85
Exon sequences
Seq C1 exon
CAGATGCCTCGGACCTGCAGGGCCGCCAGCTGCTGGCCGGCTTGGACAAGGTGGCCAGCGACCTGGACCGGCAGGAGAAGGCCATCACGGCCATCCTGCGGCCGCCGCTGGAGCAGGGCCGGGCTGTGCAGGACAGCGCCGAGAGGGCCAAGGACCTCAAG
Seq A exon
AACATCACCAACGAGCTGCTGCGGATCGAGCCCGAGAAGGCGCGCAGCACGGCCGAGGGCGAGGCGTTCGTGCGGGCCCTCCCGGACAGCGGCAGCACCGCCCTGCTGAGGACGCGGGTGGAGGACACCCAGCGCAGATACGAGCGCCTGGTGCAGCTGCTGGAAGCCGCCCAGGAGAA
Seq C2 exon
GCTCGACATCGCCAACCGCCTGGAGAAGAGCCTGCAGCAGGGCCGGGAGATGCTGGCCACGTATGAGACCCAGCTGGCCCAGGAGGACACGGTGCCCGAGAGTGGCCAGGCCCTGGACAGCAGGAGGCAGGAGCTGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002178-'19-20,'19-19,21-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=0.433 C2=0.617
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGCCTCGGACCTGCAG
R:
TGGGCCAGCTGGGTCTCATA
Band lengths:
242-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]