GgaEX6013100 @ galGal3
Exon Skipping
Gene
ENSGALG00000002201 | Q6PVZ7_CHICK
Description
NA
Coordinates
chr14:14027813-14029190:-
Coord C1 exon
chr14:14029033-14029190
Coord A exon
chr14:14028103-14028281
Coord C2 exon
chr14:14027813-14027951
Length
179 bp
Sequences
Splice sites
3' ss Seq
AAGGTTTTTTCCTACCGCAGAAC
3' ss Score
7.33
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
ATGCTGCATCAGTTCAGGGCCGCCAGCTTCTGGCAGGGCTGGAGAAAGTGCACAGTGACCTGGACAAGTTGGAGAAAGCAATAACAGCAAACCTCCGTCCGCCACTGGAGCAGAGCCGGGCTGTGCAGGACAGCACCGAGCGCTCCAAGGACCTGAAG
Seq A exon
AACATAACCAATGAAGTGCGTCGCATCGAACCAGAGAAAGTGAGGAAGATCCAGGACTGCGAGGCCTTCATTGAGTCCGTGCCCAACACTGGCAGTGCCACACTGGTGAAGAACAAGGTGGAGAACACCAACAAGAAGTACGACCGCGTGGTTCAGCTGCTCAGTGCTGCCCAGGAGAA
Seq C2 exon
AGTTGAGGTGGCCACGCACCTTGAGAAGAGCCTCCAGCAAGGCCGAGATCTGCTGTCCTCATATGAGAACAAACTGGTCACAGACGACACCGTGCCGGAGGACTTGCGGGTGATAGACCGTAAGAAAGAAGAGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002201-'15-15,'15-14,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.396 A=0.217 C2=0.106
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGAAAGTGCACAGTGA
R:
TACGGTCTATCACCCGCAAGT
Band lengths:
243-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]