DreEX0057487 @ danRer10
Exon Skipping
Gene
ENSDARG00000101043 | ppl
Description
periplakin [Source:ZFIN;Acc:ZDB-GENE-041008-196]
Coordinates
chr3:36324682-36325992:-
Coord C1 exon
chr3:36325829-36325992
Coord A exon
chr3:36325042-36325220
Coord C2 exon
chr3:36324682-36324820
Length
179 bp
Sequences
Splice sites
3' ss Seq
CTCTAGTGTTTTCTTCACAGGAC
3' ss Score
8.24
5' ss Seq
CAAGTGAGC
5' ss Score
6.39
Exon sequences
Seq C1 exon
GCGCAGATAAGCAAGAGCAGCAGTGCCGTCAGCTGATGGCAGGACTGGATAAAGTTGTCAGCGATCTGGATAAGCAGGAGAAGGCCATTTACTCTCGTGTGCGCCCTCCACTGGAGCAGACGCGTCCTGTGCAAGACAGCGCTGATAGGCTGCAGGACATCAGG
Seq A exon
GACATTACTTCTGCTGTCAATAAGATAGAGCCAGAAAAGTCTGCAAAAGTAAAGGAGGCTGAGGCTTTCCTTAAATCCTCCCCGAAATGCGCAAGTGCCCCACAGCTCTACTCCAAGGTGGATGATACTAACAAGAAATACAACAAAGTTGATTTGCTGCTGAAATGTTCAACTGACAA
Seq C2 exon
ACTGCAGAACTCCTATCAGCTGGAGAACTCACTGCAGAATGGCAAAACTCTGCTGTCCACTTATGAAAACAAACTGGCAAGAGAAGAGACTGCCCCATCTGACCCCGCTTCAATAGAGAAGACCCAGCGCGAGTTGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101043-'19-20,'19-19,21-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.636 A=0.400 C2=0.809
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGATAAGCAAGAGCAGCA
R:
GGCAGTCTCTTCTCTTGCCAG
Band lengths:
257-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]