RnoEX6046163 @ rn6
Exon Skipping
Gene
ENSRNOG00000002930 | Ppl
Description
periplakin [Source:RGD Symbol;Acc:1305511]
Coordinates
chr10:10677139-10679693:+
Coord C1 exon
chr10:10677139-10677296
Coord A exon
chr10:10679285-10679463
Coord C2 exon
chr10:10679555-10679693
Length
179 bp
Sequences
Splice sites
3' ss Seq
TGCGGTCTTGATCCCTGTAGAAC
3' ss Score
7.67
5' ss Seq
GAAGTAGGT
5' ss Score
6.22
Exon sequences
Seq C1 exon
ATGCCTCCGATCTTCAGGGGCGACAGCTGCTGGCTGGCTTGGACCAAGTGGCCAGTGACCTGGACCGGCAGGAGAAGGCTATCACGGGGATCCTACGGCCACCCCTTGAGCAGGGACGGGCAATAGAAGATAGTGCTGAGCGGGCCAAGCACCTCAAG
Seq A exon
AACATTACCAATGAGCTGCTACAGATTGAGCCAGAGAAGATACAGCGCACAGCTGAGTGTGAGGCCTTCGTGCAGGCCCTCCCGGGCAGTGGCACCACACCCTTGCTGAAGACCCGGGTGGAAGATACCAACCAGAAATATAAGCGACTGGTACAGCTGCTAGAAGCAGCCCAGGAGAA
Seq C2 exon
GGTGGATGTTGCCAACCGCCTGGAGAACAGTCTGCAACGGGGCAGGGAGCTGCTGGCCTCCCACGAGAACAGGCTGATGCAGGATGACACAATACCTGAAAGTGACTACATGTTGGACAGCAAGAGGCAGGAGCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002930-'16-14,'16-13,17-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.585 A=0.250 C2=0.745
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGACCAAGTGGCCAGTG
R:
CTGCCTCTTGCTGTCCAACAT
Band lengths:
251-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]