BtaEX6109032 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018560 | DNAH3
Description
Bos taurus dynein, axonemal, heavy chain 3 (DNAH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099199]
Coordinates
chr25:19079020-19081417:-
Coord C1 exon
chr25:19081219-19081417
Coord A exon
chr25:19079361-19079469
Coord C2 exon
chr25:19079020-19079133
Length
109 bp
Sequences
Splice sites
3' ss Seq
TCTTATTTTCTTCCCCTTAGGAC
3' ss Score
12.54
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
CTCGTGATGTGGTAGCCAAGTTATCTGAGGACAACGTCTGCGATCTGAACGATTTCCAGTGGATCTCCCAACTGCGCTACTACTGGGATTCCAAGGATGTACAGGTGCAGATGATTACTACAGAGGCCTTATACGGCTATGAGTACCTGGGAAACTCCCCCCGGCTGGTGATTACACCCCTCACTGACCGCTGCTACAG
Seq A exon
GACACTGATGGGGGCTTTGAAGCTGAACCTTGGAGGAGCCCCAGAGGGTCCAGCTGGGACAGGCAAGACAGAAACCACCAAAGATCTGGCCAAAGCTTTGGCCAAGCAG
Seq C2 exon
TGTGTGGTCTTCAACTGCTCTGATGGTCTGGATTACAAAGCCATGGGGAAGTTCTTCAAAGGACTAGCCCAGGCTGGAGCATGGGCCTGCTTTGATGAGTTCAACAGGATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018560-'30-32,'30-31,31-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.216 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(9.5=32.8)
A:
PF127742=AAA_6=FE(15.6=100)
C2:
PF127742=AAA_6=FE(16.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGTCTGCGATCTGAACGA
R:
GCCTGGGCTAGTCCTTTGAAG
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]