DreEX6096506 @ danRer10
Exon Skipping
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39577643-39579531:+
Coord C1 exon
chr24:39577643-39577841
Coord A exon
chr24:39578098-39578206
Coord C2 exon
chr24:39579418-39579531
Length
109 bp
Sequences
Splice sites
3' ss Seq
GAATGCTGATTGGTTGACAGGAC
3' ss Score
4.08
5' ss Seq
CAGGTGCTC
5' ss Score
3.6
Exon sequences
Seq C1 exon
CACGTGATGTTGTGTGCAAGCTGGCCCAGGACGGAGTTTCATCCCTTAATGATTTCCAGTGGATTTCCCAGCTGCGCTATTTCTGGGAGGATGGAGAGGTCATGTTGAGGATGATCACCACTGCTATCAGATACGGATATGAATATCTTGGCAACTCACCGCGTCTGGTTATAACACCACTAACTGACCGCTGCTACAG
Seq A exon
GACTCTGATGGGTGCATTGAAGCTAAATCTAGGTGGAGCTCCAGAGGGTCCTGCAGGAACTGGAAAAACAGAGACAACTAAAGATCTGGCTAAAGCACTCGCCAAACAG
Seq C2 exon
TGTGTGGTGTTCAACTGTTCTGATGGTCTGGACTACAAAGCGATGAGTAAATTCTTCAAAGGCCTGGCACAGTCTGGAGCGTGGGCATGTTTTGATGAGTTCAACCGGATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468-'22-24,'22-23,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.216 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(9.5=32.8)
A:
PF127742=AAA_6=FE(15.6=100)
C2:
PF127742=AAA_6=FE(16.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGATGTTGTGTGCAAGCTG
R:
CATCGCTTTGTAGTCCAGACCA
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]