HsaEX6042660 @ hg19
Exon Skipping
Gene
ENSG00000158486 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:2949]
Coordinates
chr16:21060890-21063189:-
Coord C1 exon
chr16:21062991-21063189
Coord A exon
chr16:21061231-21061339
Coord C2 exon
chr16:21060890-21061003
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTCTATTTTCTTCCCCATAGGAC
3' ss Score
12.78
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CCCGCGACGTGGTGGCCAAGTTATCTGAGGACAGGGTCTCCGATCTGAATGATTTCCAATGGATCTCACAGCTGCGCTACTACTGGGTGGCCAAGGATGTGCAGGTGCAGATTATCACCACAGAAGCCTTGTATGGCTATGAGTACCTGGGAAACTCCCCCCGGCTGGTGATCACACCCCTCACCGACCGCTGCTACAG
Seq A exon
GACACTGATGGGAGCTTTGAAGCTGAACCTTGGGGGTGCTCCAGAGGGTCCAGCTGGGACTGGCAAGACAGAAACCACCAAAGATTTGGCCAAAGCCTTGGCTAAGCAG
Seq C2 exon
TGTGTGGTCTTCAACTGCTCCGATGGTTTGGATTACAAAGCTATGGGGAAGTTCTTCAAGGGGCTGGCACAGGCTGGAGCATGGGCGTGCTTTGATGAGTTCAACAGGATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486-'33-35,'33-34,34-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.216 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(9.5=32.8)
A:
PF127742=AAA_6=FE(15.6=100)
C2:
PF127742=AAA_6=FE(16.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGACAGGGTCTCCGATC
R:
CCAGCCCCTTGAAGAACTTCC
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)