MmuEX6013646 @ mm9
Exon Skipping
Gene
ENSMUSG00000052273 | Dnahc3
Description
dynein, axonemal, heavy chain 3 [Source:MGI Symbol;Acc:MGI:2683040]
Coordinates
chr7:127173483-127176337:-
Coord C1 exon
chr7:127176139-127176337
Coord A exon
chr7:127173817-127173925
Coord C2 exon
chr7:127173483-127173596
Length
109 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTTTTCCCTTTCAGGAC
3' ss Score
13.8
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
CTCGTGATGTGGTGGCCAAACTGAGGCATGATCATATCAACAGTCTAAATGACTTCCAGTGGATTTCACAGCTACGATACTATTGGACGGAAAAGAACGTTCATGTGCAAATGATAACCACAGAAGCCTTGTATGGCTACGAGTACCTGGGAAACTCTCCCCGGCTAGTGATCACTCCTCTCACAGACCGCTGCTACAG
Seq A exon
GACCCTAATGGGAGCTTTGAAGTTGAACCTTGGAGGTGCTCCAGAGGGTCCAGCTGGGACAGGCAAGACAGAAACCACCAAAGATCTGGCTAAAGCTTTGGCCAAGCAG
Seq C2 exon
TGTGTGGTCTTCAATTGTTCTGACGGCTTGGATTACAAAGCCATGGGCAAGTTCTTCAAGGGGCTGGCTCAAGCTGGAGCATGGGCCTGTTTTGATGAATTCAACAGGATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052273-'27-28,'27-27,28-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.216 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(9.5=32.8)
A:
PF127742=AAA_6=FE(15.6=100)
C2:
PF127742=AAA_6=FE(16.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGTGGTGGCCAAACTGAG
R:
CCCCTTGAAGAACTTGCCCAT
Band lengths:
258-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: