BtaEX6109037 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018560 | DNAH3
Description
Bos taurus dynein, axonemal, heavy chain 3 (DNAH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099199]
Coordinates
chr25:19057935-19073204:-
Coord C1 exon
chr25:19072985-19073204
Coord A exon
chr25:19072258-19072392
Coord C2 exon
chr25:19057935-19058046
Length
135 bp
Sequences
Splice sites
3' ss Seq
TCTTGAATTTTTGTTAACAGGGA
3' ss Score
7.9
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
TCTTGCTCAGAAGATTGTTGCAACCTACCGCCTGTGTTCAGAGCAACTCTCCTCCCAGCATCACTATGACTATGGCATGCGTGCTGTCAAGTCTGTGCTCACTGCTGCTGGCAACCTGAAACTCAAGTATCCAGAGGAGAATGAGAGTGTCCTGCTGCTCCGGGCCTTGCTTGATGTCAACCTGGCCAAGTTCTTGGCTCAAGATGTCCCTCTGTTTCAG
Seq A exon
GGAATTATATCAGATTTGTTTCCTGGAGTTATTCTTCCACAGCCAGACTATGTAGTTTTTATGGAAGTACTAAATGCGAACATCAAAAAGATGAAACTTCAGCCAGTACCTTGGTTTATTGGAAAAATTATCCAG
Seq C2 exon
ATCTACGAGATGATGCTGGTAAGACATGGCTATATGATTGTTGGAGATCCCATGGGTGGCAAGACCTGTGCTTATAAAGTGTTGGCTGCAGCTCTGGGTGATTTATACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018560-'35-37,'35-36,36-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(19.0=59.5)
A:
NO
C2:
PF077289=AAA_5=PU(19.4=73.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGCAACTCTCCTCCCAG
R:
ATAAGCACAGGTCTTGCCACC
Band lengths:
258-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]