DreEX6096501 @ danRer10
Exon Skipping
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39580255-39582444:+
Coord C1 exon
chr24:39580255-39580474
Coord A exon
chr24:39580552-39580686
Coord C2 exon
chr24:39582333-39582444
Length
135 bp
Sequences
Splice sites
3' ss Seq
TGCATTTCTTTGTGTTTTAGGGA
3' ss Score
11.3
5' ss Seq
CAAGTACAA
5' ss Score
-1.09
Exon sequences
Seq C1 exon
TCTGGCTCAGAAGATTGTGGCAACGTATCGTCTGTGTTCAGAGCAGCTCTCGTCTCAACCGCACTACGATTATGGGATGCGTGCGGTGAAATCCGTCCTGACTGCCGCAGGAAACCTGAAACTCAAATACCCAGAGGAGGACGAGATCGTTTTGCTCCTCAGAGCTCTTATGGATGTCAACATGGCTAAGTTTGTTGCTCAAGACTTACCACTGTTTCAG
Seq A exon
GGAATCATCACAGATCTGTTTCCTGGAGTGGTGCTCGCCAAACCAGATTATGAGCTACTGCTAAAGGCTCTGCATGACAACATCGGCAAGATGAAACTGCAGCCTGTGCCATGGTTCATCAGCAAAATAATACAA
Seq C2 exon
GTGTATGAGATGATGCTGGTCAGACATGGCTTCATGATTGTCGGCGAGCCAATGGGTGGAAAAACCTCAGCTTATAAAGTTCTGGCCGGAGCTTTGGGAGACCTTTATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468-'27-29,'27-28,28-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(19.0=59.5)
A:
NO
C2:
PF077289=AAA_5=PU(19.4=73.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGATTATGGGATGCGTGCG
R:
CAAAGCTCCGGCCAGAACTTT
Band lengths:
252-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]