GgaEX0002948 @ galGal3
Exon Skipping
Gene
ENSGALG00000002350 | DNAH3
Description
NA
Coordinates
chr14:15725175-15727616:-
Coord C1 exon
chr14:15727397-15727616
Coord A exon
chr14:15726470-15726604
Coord C2 exon
chr14:15725175-15725286
Length
135 bp
Sequences
Splice sites
3' ss Seq
ATTCTGTCTCTCCTGAACAGAGT
3' ss Score
8.51
5' ss Seq
CAGGTTCCT
5' ss Score
0.18
Exon sequences
Seq C1 exon
TCTTGCCCAGAAGATCGTCGCCACGTACCGCTTGTGCTCAGAGCAGCTCTCATCTCAGCACCACTATGATTATGGCATGCGTGCTGTTAAATCTGTGCTGACAGCAGCAGGAAACTTAAAGCTGAAGTACCCAGCTGAGAATGAGAGTGTGCTGCTGCTGCGCGCTTTGATGGATGTGAACCTCGCCAAATTCCTGGCACAGGATGTGCCGTTGTTTCAG
Seq A exon
AGTATCATATCTGACCTGTTCCCGGGAGTGGTTCTTCCCACACCTGACTACGAGCTCTTTGTTGAGGCAGTGACTGCAAATATCAGGAAAATGGATCTTCAGCCGGTTCCGTGGTTCATCGGGAAAATTATTCAG
Seq C2 exon
ATATACGAAATGATGCTGGTGCGCCATGGCTTCATGATTGTTGGAGATCCTCTGGGTGGGAAGACGTGTGCATACCAAGTGCTGGCTGGAGCCCTTGGGGATCTGTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350_CASSETTE3
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(19.0=59.5)
A:
NO
C2:
PF077289=AAA_5=PU(19.4=73.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTCATCTCAGCACCACT
R:
GCACTTGGTATGCACACGTCT
Band lengths:
258-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]