HsaEX0020189 @ hg19
Exon Skipping
Gene
ENSG00000158486 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:2949]
Coordinates
chr16:21045296-21049302:-
Coord C1 exon
chr16:21049083-21049302
Coord A exon
chr16:21048036-21048170
Coord C2 exon
chr16:21045296-21045407
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTTTAAATTCTTTTTAACAGGGA
3' ss Score
9.41
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
TCTCGCCCAGAAGATCGTTGCGACCTACCGCCTGTGCTCGGAACAACTGTCCTCTCAGCATCACTATGACTACGGTATGCGCGCTGTCAAGTCTGTGCTTACTGCCGCAGGAAACCTGAAGCTCAAGTATCCAGAGGAGAATGAAAGTGTCCTGCTGCTCCGGGCATTGCTTGATGTCAATCTGGCCAAGTTCTTAGCGCAAGATGTCCCTCTGTTTCAG
Seq A exon
GGAATTATATCTGATTTATTTCCTGGAGTTGTTCTTCCAAAGCCAGACTATGAAGTTTTTCTGAAAGTGCTGAATGATAACATCAAAAAGATGAAACTCCAGCCAGTACCTTGGTTTATAGGGAAAATTATCCAG
Seq C2 exon
ATCTACGAAATGATGCTGGTGAGACATGGCTATATGATTGTAGGAGACCCCATGGGCGGCAAGACCTCTGCTTATAAAGTGTTGGCTGCAGCTCTCGGCGATTTACACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(19.0=59.5)
A:
NO
C2:
PF077289=AAA_5=PU(19.4=73.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGACTACGGTATGCGCGC
R:
GAGAGCTGCAGCCAACACTTT
Band lengths:
253-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)