HsaEX0020186 @ hg19
Exon Skipping
Gene
ENSG00000158486 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:2949]
Coordinates
chr16:21042367-21048170:-
Coord C1 exon
chr16:21048036-21048170
Coord A exon
chr16:21045296-21045407
Coord C2 exon
chr16:21042367-21042608
Length
112 bp
Sequences
Splice sites
3' ss Seq
TGAATGATGTCTCCTCCCAGATC
3' ss Score
8.75
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GGAATTATATCTGATTTATTTCCTGGAGTTGTTCTTCCAAAGCCAGACTATGAAGTTTTTCTGAAAGTGCTGAATGATAACATCAAAAAGATGAAACTCCAGCCAGTACCTTGGTTTATAGGGAAAATTATCCAG
Seq A exon
ATCTACGAAATGATGCTGGTGAGACATGGCTATATGATTGTAGGAGACCCCATGGGCGGCAAGACCTCTGCTTATAAAGTGTTGGCTGCAGCTCTCGGCGATTTACACGCAG
Seq C2 exon
CCAATCAGATGGAGGAGTTTGCTGTGGAGTACAAGATCATCAACCCCAAGGCTATCACGATGGGGCAGCTGTATGGGTGCTTTGACCAAGTGAGCCACGAGTGGATGGATGGTGTCCTTGCCAATGCTTTCCGGGAGCAAGCGTCTTCACTCTCTGATGATCGCAAGTGGATTATATTTGATGGGCCAGTGGATGCTATTTGGATTGAAAATATGAACACTGTTCTGGATGACAATAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486-'39-41,'39-40,40-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077289=AAA_5=PU(19.4=73.7)
C2:
PF077289=AAA_5=FE(55.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCAGCCAGTACCTTGGTT
R:
CAAATAGCATCCACTGGCCCA
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)