MmuEX6013652 @ mm9
Exon Skipping
Gene
ENSMUSG00000052273 | Dnahc3
Description
dynein, axonemal, heavy chain 3 [Source:MGI Symbol;Acc:MGI:2683040]
Coordinates
chr7:127154386-127163339:-
Coord C1 exon
chr7:127163205-127163339
Coord A exon
chr7:127159954-127160065
Coord C2 exon
chr7:127154386-127154627
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTTATGACTTCTCTTCCCAGATC
3' ss Score
9.88
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GGCATTATCTCAGATCTGTTTCCTGGAGTTGTTCTTCCAAAGCCAGACTACGAAGTTTTCCTGGAAGCATTGAACAACAACATCAGAAAAATGAAGCTGCAGCCAGTGCCCTGGTTCATTGGGAAGATTATCCAG
Seq A exon
ATCTATGAGATGATGCTGGTAAGACATGGCTACATGATTGTTGGAGATCCAATGGGTGGCAAGACATCAGCTTATAAAGTTCTGGCTGCAGCTCTGGGTGATTTACATGCAG
Seq C2 exon
CCAACCAGATGGAAGAGTTTGCTGTGGAGTTCAAGATCATCAACCCCAAGGCTATCACAATGGGGCAACTGTATGGCTGCTTTGATGCTGTGAGCCATGAGTGGACAGATGGTGTCCTGGCCAATGCTTTCCGGGAACAAGCGTCTTCCATAACTGATGACCGCAAATGGATTATATTTGATGGACCAGTAGATGCTGTTTGGATTGAAAATATGAACACTGTCCTGGATGACAATAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052273-'33-34,'33-33,34-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077289=AAA_5=PU(19.4=73.7)
C2:
PF077289=AAA_5=FE(55.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTTGTTCTTCCAAAGCCA
R:
GCTTGTTCCCGGAAAGCATTG
Band lengths:
254-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: