GgaEX6013276 @ galGal4
Exon Skipping
Gene
ENSGALG00000002350 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr14:15008503-15010726:-
Coord C1 exon
chr14:15010592-15010726
Coord A exon
chr14:15009297-15009408
Coord C2 exon
chr14:15008503-15008744
Length
112 bp
Sequences
Splice sites
3' ss Seq
GTGTTGTGTCACTGCTGCAGATA
3' ss Score
9.04
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
AGTATCATATCTGACCTGTTCCCGGGAGTGGTTCTTCCCACACCTGACTACGAGCTCTTTGTTGAGGCAGTGACTGCAAATATCAGGAAAATGGATCTTCAGCCGGTTCCGTGGTTCATCGGGAAAATTATTCAG
Seq A exon
ATATACGAAATGATGCTGGTGCGCCATGGCTTCATGATTGTTGGAGATCCTCTGGGTGGGAAGACGTGTGCATACCAAGTGCTGGCTGGAGCCCTTGGGGATCTGTGTGCAG
Seq C2 exon
CAAAATCAATGGATGAATTTGCTGTTGAATTCCAAGTTATTAATCCTAAAGCAATTACCATGGGACAACTGTACGGCAGCTTTGATCCTGTAAGCCATGAGTGGACAGATGGGGTTCTCGCACACGCCTTCAGGGCACAAGCATCTTCTACTACAGATGATCGAAAGTGGATTGTATTTGATGGCCCAGTGGATGCAGTTTGGATAGAGAATATGAACACTGTGCTGGATGACAATAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350-'41-40,'41-38,44-40=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077289=AAA_5=PU(19.4=73.7)
C2:
PF077289=AAA_5=FE(55.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCTTCCCACACCTGACT
R:
AAGATGCTTGTGCCCTGAAGG
Band lengths:
254-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]