BtaEX6109038 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018560 | DNAH3
Description
Bos taurus dynein, axonemal, heavy chain 3 (DNAH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099199]
Coordinates
chr25:19056116-19072392:-
Coord C1 exon
chr25:19072258-19072392
Coord A exon
chr25:19057935-19058046
Coord C2 exon
chr25:19056116-19056357
Length
112 bp
Sequences
Splice sites
3' ss Seq
TACATGGTGTTCCCTCCCAGATC
3' ss Score
8.47
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GGAATTATATCAGATTTGTTTCCTGGAGTTATTCTTCCACAGCCAGACTATGTAGTTTTTATGGAAGTACTAAATGCGAACATCAAAAAGATGAAACTTCAGCCAGTACCTTGGTTTATTGGAAAAATTATCCAG
Seq A exon
ATCTACGAGATGATGCTGGTAAGACATGGCTATATGATTGTTGGAGATCCCATGGGTGGCAAGACCTGTGCTTATAAAGTGTTGGCTGCAGCTCTGGGTGATTTATACGAAG
Seq C2 exon
CCAAACAGATGGAAGAGTTCGCTGTGGAGTATAAGATCATTAATCCCAAGGCTATCACCATGGGGCAGCTGTATGGGTGCTTTGATCAAGTGAGCCACGAATGGACAGATGGTGTCCTTGCCAATGCTTTCCGAGAGCAAGCATCTTCTTTGTCTGATGACCGCAAGTGGATTATATTTGATGGGCCAGTGGATGCTGTTTGGATTGAAAATATGAACACTGTTCTGGATGACAATAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018560-'36-38,'36-37,37-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077289=AAA_5=PU(19.4=73.7)
C2:
PF077289=AAA_5=FE(55.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCAGCCAGTACCTTGGTT
R:
ATCCAAACAGCATCCACTGGC
Band lengths:
245-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]