DreEX6096500 @ danRer10
Exon Skipping
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39580552-39583738:+
Coord C1 exon
chr24:39580552-39580686
Coord A exon
chr24:39582333-39582444
Coord C2 exon
chr24:39583497-39583738
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTGTTGTGTGTGCAGGTG
3' ss Score
9.27
5' ss Seq
AAGGTGTTC
5' ss Score
1.14
Exon sequences
Seq C1 exon
GGAATCATCACAGATCTGTTTCCTGGAGTGGTGCTCGCCAAACCAGATTATGAGCTACTGCTAAAGGCTCTGCATGACAACATCGGCAAGATGAAACTGCAGCCTGTGCCATGGTTCATCAGCAAAATAATACAA
Seq A exon
GTGTATGAGATGATGCTGGTCAGACATGGCTTCATGATTGTCGGCGAGCCAATGGGTGGAAAAACCTCAGCTTATAAAGTTCTGGCCGGAGCTTTGGGAGACCTTTATAAAG
Seq C2 exon
AAGGACTGATAGAGGAGTTTGCAGTAGATTTCCGCATCATAAACCCGAAGGCGGTCACGATGGGGCAGCTGTACGGCTGTTTTGATCCAGTGAGTCACGAGTGGTCAGATGGTGTTTTGGCCACTTCATTCAGACAGCAGGCCCAGTGCACCAATGACGACCGCCAGTGGATCATCTTCGACGGGCCCATTGACGCAGTCTGGATTGAGAACATGAACACTGTTTTGGATGACAACAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468-'28-30,'28-29,29-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077289=AAA_5=PU(19.4=73.7)
C2:
PF077289=AAA_5=FE(55.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTCTGCATGACAACATCG
R:
GTCGAAGATGATCCACTGGCG
Band lengths:
253-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]