BtaEX6109085 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N096]
Coordinates
chr25:19691149-19699310:+
Coord C1 exon
chr25:19691149-19691330
Coord A exon
chr25:19698702-19698839
Coord C2 exon
chr25:19699302-19699310
Length
138 bp
Sequences
Splice sites
3' ss Seq
CACTTTGGCTTTCTTTGTAGCAC
3' ss Score
8.09
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
AAACTGGTGTGAACTGGAATAAGATTTGGACACCAGCCACCCTTGAGGATAACCTCACCTTTGGCCATATGATGGGAATGCTTGTAATTGATGCTTTCTTGTATGGCCTTGTGACCTGGTACATAGAAGCTGTCTTTCCAGGGCAATATGGCATGCCTCAACCATGGTACTTTTTTCTTATG
Seq A exon
CACTCGTACTGGTTCAGCAAACCAAGAATTAAAATAAAAAAAGAAGAAATGAATGACTCTGTGATAACTCAAAACAAGTATTTTGAGGCTGAACCTACTGGCTTGGTGGCAGGTATCAAGATCAAACATTTGTACAAG
Seq C2 exon
AAGACTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000035915-'13-15,'13-14,14-15=AN
Average complexity
A_C2
Mappability confidence:
88%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(15.4=65.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]