MmuEX0002959 @ mm10
Exon Skipping
Gene
ENSMUSG00000051900 | Abca16
Description
ATP-binding cassette, sub-family A (ABC1), member 16 [Source:MGI Symbol;Acc:MGI:2388711]
Coordinates
chr7:120452957-120465802:+
Coord C1 exon
chr7:120452957-120453138
Coord A exon
chr7:120457051-120457185
Coord C2 exon
chr7:120465685-120465802
Length
135 bp
Sequences
Splice sites
3' ss Seq
TCTCTTATCTTTTTCTGTAGCGC
3' ss Score
9.75
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
AGATTGGTGTTAAATGGCACAACCTTTGGACACCAGCCAATCTTGAGGATAACCTCAACTTTGGCTATATGCTTGGAATGCTTTTGTTTGATGCTTTCTTATACAGCCTTGTTACCTGGTATGTAGAAGCCGTCTTTCCTGGACAGTGTGGTGTGCCTCAACCATGGTACTTTTTCCTTATG
Seq A exon
CGCTCATATTGGTTTGGCAAACCAAAAATTAGAAAGACTACAGAAGAGGCAAAGTGCACCCCCATAGTACATAACTGCTATGAGGCTGAACCTCCCAACTTGGAGGCAGGAATCCATATCATGCATTTGCACAAG
Seq C2 exon
GAATTTAAAAACAAACCTGCAGTAAACAACTTGTCACTGAACATATATGAGGGGCAGGTCACTGTTCTTCTGGGACACAATGGGGCAGGAAAGACCACAACCCTGTCTGTTCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051900-'14-16,'14-15,15-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(9.3=65.6)
A:
NO
C2:
PF0000522=ABC_tran=PU(28.1=83.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACCAGCCAATCTTGAGG
R:
GTCTTTCCTGCCCCATTGTGT
Band lengths:
250-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types