RnoEX0004796 @ rn6
Exon Skipping
Gene
ENSRNOG00000015783 | Abca16
Description
ATP-binding cassette, subfamily A (ABC1), member 16 [Source:RGD Symbol;Acc:1563534]
Coordinates
chr1:190241376-190282223:+
Coord C1 exon
chr1:190241376-190241557
Coord A exon
chr1:190265285-190265419
Coord C2 exon
chr1:190282077-190282223
Length
135 bp
Sequences
Splice sites
3' ss Seq
TCTCCTGTCTTTTTATGTAGCGC
3' ss Score
9.38
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
AGATTGGTGTTAAATGGGACAACCTTTGGACACCAGCCAATCTTGAGGATAATCTCAACTTTGGCTATATGCTTGGAATGCTTTTGCTTGATGCTTTCTTATACAGCCTTGTTACCTGGTATGTAGAAGCTGTCTTTCCTGGACAGTGTGGTGTGCCTCAACCATGGTACTTTTTCATTATG
Seq A exon
CGCTCATATTGGTTTGGCAAACCAAAAATCAGAAAGATTGGAGAAGAAGCAAAGTCTATCCCTGTAGTACATAACTGTTATGAAGCTGAACCTTCCAACCTGGAGGCAGGAATCCAGATCAAGCATTTGCACAAG
Seq C2 exon
GAATTTAAAACTAAACCTGCAATAAACAACTTGTCACTGAACATCTATGAGGGGCAAGTCACTGTTCTTCTGGGACACAATGGGGCAGGAAAGACCACAACCTTGTCTGTTCTCACAGGTGTGTATTTGTCTGCATCCAGGGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015783_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(9.3=65.6)
A:
NO
C2:
PF0000522=ABC_tran=PU(28.1=83.7)
Main Skipping Isoform:
ENSRNOT00000001933fB297
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACCAGCCAATCTTGAGG
R:
GTCTTTCCTGCCCCATTGTGT
Band lengths:
250-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]