Special

MmuEX0002959 @ mm9

Exon Skipping

Gene
ENSMUSG00000051900 | Abca16
Description
ATP-binding cassette, sub-family A (ABC1), member 16 [Source:MGI Symbol;Acc:MGI:2388711]
Coordinates
chr7:127596471-127609316:+
Coord C1 exon
chr7:127596471-127596652
Coord A exon
chr7:127600565-127600699
Coord C2 exon
chr7:127609199-127609316
Length
135 bp
Sequences
Splice sites
3' ss Seq
TCTCTTATCTTTTTCTGTAGCGC
3' ss Score
9.75
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
AGATTGGTGTTAAATGGCACAACCTTTGGACACCAGCCAATCTTGAGGATAACCTCAACTTTGGCTATATGCTTGGAATGCTTTTGTTTGATGCTTTCTTATACAGCCTTGTTACCTGGTATGTAGAAGCCGTCTTTCCTGGACAGTGTGGTGTGCCTCAACCATGGTACTTTTTCCTTATG
Seq A exon
CGCTCATATTGGTTTGGCAAACCAAAAATTAGAAAGACTACAGAAGAGGCAAAGTGCACCCCCATAGTACATAACTGCTATGAGGCTGAACCTCCCAACTTGGAGGCAGGAATCCATATCATGCATTTGCACAAG
Seq C2 exon
GAATTTAAAAACAAACCTGCAGTAAACAACTTGTCACTGAACATATATGAGGGGCAGGTCACTGTTCTTCTGGGACACAATGGGGCAGGAAAGACCACAACCCTGTCTGTTCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051900-'11-12,'11-11,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF126982=ABC2_membrane_3=PD(9.3=65.6)

							
A:
NO

							
C2:
PF0000522=ABC_tran=PU(28.1=83.7)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000112736





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000061094
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr25:19698702-19698839 
BtaEX6109085
([1])
Chicken
(galGal4)
chr14:13580057-13580203 
HIGH PSI
GgaEX1005371
(ABCA3)
Chicken
(galGal3)
chr14:14345440-14345586 
HIGH PSI
GgaEX1005371
(E1BVQ5_CHICK)
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GGACACCAGCCAATCTTGAGG

				
R: 
GTCTTTCCTGCCCCATTGTGT

				
Band lengths: 
250-385

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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