BtaEX6109112 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MHK9]
Coordinates
chr25:19439113-19444193:+
Coord C1 exon
chr25:19439113-19439242
Coord A exon
chr25:19443637-19443791
Coord C2 exon
chr25:19444038-19444193
Length
155 bp
Sequences
Splice sites
3' ss Seq
TGTCTTATGCTTAATTCTAGGTC
3' ss Score
9.57
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
GAATTCACATTGCAAAATATGACTGTACTAGCAGTTCAAGACTTGTCTTTGAATTTATATGAAGGGCAAATCACTGTCCTTCTCGGTCATAATGGAGCAGGGAAGACTACTACATTATCTATCCTCACAG
Seq A exon
GTCTCTATCGTCCTACCAGTGGAAAGGTGTATATTAGTGGATATGATATCTCGAAAGATATGGTTCAAGTCAGGAAAAGCTTGGGCTTGTGCCCCCAGGATGACATATTGTTCCATCACTTGACAGTCTCAGAACATCTCTATTTCTACTGTGTG
Seq C2 exon
ATAAAAGGAGTACCTCCAGAAATACAATCTAAAGAAATTAACAAAATGCTGATATCTTTTGGCCTGATAGAAAAGCATGATGCCCTTGCAAAGTCACTGAGTGGAGGAATGAAGCGTAAACTCTCCATTATTATAGCACTTATAGGAGGCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006717-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(22.1=72.7)
A:
PF0000522=ABC_tran=FE(35.2=100)
C2:
PF0000522=ABC_tran=FE(35.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTTCAAGACTTGTCTTTGA
R:
CTTGGAGCCTCCTATAAGTGCT
Band lengths:
257-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]