DreEX6015426 @ danRer10
Exon Skipping
Gene
ENSDARG00000100524 | abca3b
Description
ATP-binding cassette, sub-family A (ABC1), member 3b [Source:ZFIN;Acc:ZDB-GENE-050517-2]
Coordinates
chr3:12501011-12506728:+
Coord C1 exon
chr3:12501011-12501140
Coord A exon
chr3:12504678-12504832
Coord C2 exon
chr3:12506573-12506728
Length
155 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTTCTCCTTTGTTAGGTC
3' ss Score
10.87
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
GTGTTCAAAGTGGGAAATAAGAGCAAGGAGGCGGTGAGGGATTTAACGCTCAACATGTTTGAAGGGCAGATCACTGTCCTGCTTGGGCACAATGGAGCCGGCAAGACCACCACACTGTCAATGCTGACCG
Seq A exon
GTCTTTTCCCGCCCTCCAGCGGTCGTGCCTACATCAATGGATATGATATTTGTCAGGATATGGCTCTGATCCGCCGCAGTCTCGGTTTGTGTCCGCAGCATGACGTGCTCTTCGATAACCTCACCGTCAGAGAACACCTGCTCTTCTACACACAG
Seq C2 exon
CTGAAGGGTTACCCTCGCGAGAAGATCCCTGGAGAGGTGGACCGGATCATCCGCATCCTCAACCTTGAAGACAAGCGTAACGCCAAATGCAAGACTCTTTCTGGTGGCATGAAGAGAAAGCTTTCCATCGGCATTGCTTTAATTGGAGACTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100524-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(22.1=72.7)
A:
PF0000522=ABC_tran=FE(35.2=100)
C2:
PF0000522=ABC_tran=FE(35.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCGGTGAGGGATTTAACG
R:
AAGCAATGCCGATGGAAAGCT
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]