RnoEX6046398 @ rn6
Exon Skipping
Gene
ENSRNOG00000050057 | Abca3
Description
ATP binding cassette subfamily A member 3 [Source:RGD Symbol;Acc:1307174]
Coordinates
chr10:13756512-13758136:+
Coord C1 exon
chr10:13756512-13756641
Coord A exon
chr10:13757589-13757743
Coord C2 exon
chr10:13757981-13758136
Length
155 bp
Sequences
Splice sites
3' ss Seq
GGTCTTTGGGTCGGCTGCAGGTC
3' ss Score
5.96
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTGTTCCAAGTGGGTAATAAGGACAAGATGGGCATCAGAGACCTGACGCTGAACCTGTATGAAGGACAGATAACAGTCCTCCTGGGCCACAACGGTGCTGGGAAGACCACGACCATGTCTATGCTGACAG
Seq A exon
GTCTCTTCCCCCCTACCAGTGGGCATGCTTATATTCGTGGGTACGAGATTTCCCAAGACATGGTTCAGATCCGCAAGAGTCTGGGCCTGTGCCCCCAGCATGATGTCCTGTTTGACAACCTGACAGTTGCAGAACACCTTTACTTCTACGCACAG
Seq C2 exon
TTGAAAGGCCTCTCTGTCCAGAAGTGTCCTGAAGAGGTCAAGCAGATGCTGCACACCCTCGGGCTGGAAGACAAGCGGGACTCAAGGTCCAAGTTCCTGAGCGGGGGGATGAAGCGCAAGCTCGCCATCGGCATCGCCCTCATAGCGGGCTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050057-'18-20,'18-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(22.1=72.7)
A:
PF0000522=ABC_tran=FE(35.2=100)
C2:
PF0000522=ABC_tran=FE(35.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTAATAAGGACAAGATGGGC
R:
AGCTTGCGCTTCATCCCC
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]