MmuEX0002948 @ mm9
Exon Skipping
Gene
ENSMUSG00000062017 | Abca14
Description
ATP-binding cassette, sub-family A (ABC1), member 14 [Source:MGI Symbol;Acc:MGI:2388708]
Coordinates
chr7:127381919-127390862:+
Coord C1 exon
chr7:127381919-127382048
Coord A exon
chr7:127390353-127390507
Coord C2 exon
chr7:127390707-127390862
Length
155 bp
Sequences
Splice sites
3' ss Seq
ATGTCTTTGCTTAATTGTAGGTT
3' ss Score
9.39
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
GAATTCATTTTAAAAAACAGTACTCTGATGGCAGTAAATGACTTGTCTTTGAACTTGTATGAGGGGCAGATAACTGTTCTTCTCGGACATAACGGGGCAGGAAAAACCACCACCTTGTCCATCCTCACAG
Seq A exon
GTTTGTATCTTCCTACCAGAGGAAAGGTCTATATTAGTGGATATGACATCTCATCTGACATGGTTCAAATTAGAAAAAGCTTGGGCTTGTGTCCCCAGGATGACCTGTTGTTCCCGATGCTGACAGTGTCAGAACACCTTCATTTCTACTGCGTG
Seq C2 exon
ATCAAAGGAATACCTTTGCAGAACCAATCAAGAGAAACTAACAGAATGCTCACTTCTTTTGGCCTGCTTCAGCAAAGTAATACCATGTCAAAGGATCTGAGCGGAGGAATGAAGCGCAAGCTCTCAATCATTATAGCTCTGATAGGGGACACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062017-'15-13,'15-12,16-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(22.1=72.7)
A:
PF0000522=ABC_tran=FE(35.2=100)
C2:
PF0000522=ABC_tran=FE(35.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTTGAACTTGTATGAGGGGCA
R:
CTTAGTGTCCCCTATCAGAGCT
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: