BtaEX6109666 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007955 | SEZ6L2
Description
Bos taurus seizure related 6 homolog (mouse)-like 2 (SEZ6L2), mRNA. [Source:RefSeq mRNA;Acc:NM_001045927]
Coordinates
chr25:26637594-26638863:+
Coord C1 exon
chr25:26637594-26637785
Coord A exon
chr25:26637869-26638060
Coord C2 exon
chr25:26638746-26638863
Length
192 bp
Sequences
Splice sites
3' ss Seq
GGCTGACCTCTTCCCCGCAGTGA
3' ss Score
8.17
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
Exon sequences
Seq C1 exon
TCATGACTTGTGCCGACCCAGGTGAGATCACCAATGGGCACCGTACCACCTCCGATGCTGGCTTCCCGGTTGGCTCCCATGTCCAGTACCGCTGTCTGCCCGGGTACAGCCTGGAGGGGGCGGCCGTGCTCACCTGCTACAGCCGGGACACAGGCACGCCCAAGTGGAGCGACCGGGTCCCCAAGTGCGCCT
Seq A exon
TGAAGTACGAGCCGTGCCTGAACCCTGGGGTGCCAGAGAATGGCTACCAGACACTATACAAGCATCACTACCAGGCTGGCGAGTCTCTGCGCTTCTTCTGCTATGAGGGCTTTGAGCTCATCGGCGAGGTCACCATCACCTGTGTGCCCGGCCACCCCTCCCAGTGGACCAGCCAGCCTCCACTCTGCAAAG
Seq C2 exon
TGACCCAGACCACTGACCCGTCACGGCAGCTGGAGGGTGGAAACCTCGCCTTGGCCATTCTGCTGCCCCTGGGCTTGGTCATCATCCTTGGGAGTGGTGTTTACATATACTACACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007955-'14-17,'14-15,15-17=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=0.023 C2=0.113
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.3)
A:
PF0008415=Sushi=WD(100=89.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGATCACCAATGGGCACC
R:
GATGATGACCAAGCCCAGGG
Band lengths:
257-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]