MmuEX7034049 @ mm10
Exon Skipping
Gene
ENSMUSG00000030683 | Sez6l2
Description
seizure related 6 homolog like 2 [Source:MGI Symbol;Acc:MGI:2385295]
Coordinates
chr7:126966725-126967745:+
Coord C1 exon
chr7:126966725-126966916
Coord A exon
chr7:126967014-126967205
Coord C2 exon
chr7:126967707-126967745
Length
192 bp
Sequences
Splice sites
3' ss Seq
GCTTGGTGTGCTCCCTGCAGTAA
3' ss Score
6.3
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
Exon sequences
Seq C1 exon
TCATGACTTGTGCTGACCCTGGCGAGATCACCAATGGCCATCGGACTGCCTCAGATGCTGGTTTCCCTGTGGGCTCCCACGTCCAGTATCGCTGTCTGCCAGGGTACAGCCTGGAAGGAGCAGCTGTGCTCACCTGCTACAGCCGGGACACAGGCACACCCAAGTGGAGTGATCGGGTCCCCAAATGCGCCT
Seq A exon
TAAAGTACGAGCCGTGCCTGAACCCCGGTGTTCCTGAGAATGGTTACCAAACTCTGTACAAGCATCACTACCAAGCGGGCGAGTCGCTACGCTTCTTCTGCTACGAGGGCTTTGAGCTCATCGGCGAGGTCACCATCACATGTGTACCCGGTCACCCCTCCCAGTGGACCAGCCAGCCCCCACTCTGCAAAG
Seq C2 exon
TGGCCTATGAGGAGCTCCTGGACAACCGAAAACTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030683-'16-39,'16-28,20-39=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=0.005 C2=0.071
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.3)
A:
PF0008415=Sushi=WD(100=89.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGACTTGTGCTGACCCTGG
R:
CCAGTTTTCGGTTGTCCAGGA
Band lengths:
227-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types