RnoEX0079973 @ rn6
Exon Skipping
Gene
ENSRNOG00000027098 | Sez6l2
Description
seizure related 6 homolog like 2 [Source:RGD Symbol;Acc:1565281]
Coordinates
chr1:198400015-198401025:+
Coord C1 exon
chr1:198400015-198400206
Coord A exon
chr1:198400303-198400494
Coord C2 exon
chr1:198400987-198401025
Length
192 bp
Sequences
Splice sites
3' ss Seq
GGTTGGCCTGCTCCCTGCAGTAA
3' ss Score
5.28
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
Exon sequences
Seq C1 exon
TCATGACTTGTGCTGACCCTGGTGAGATCACTAATGGCCACCGGACTGCCTCAGATGCTGGTTTTCCTGTGGGCTCCCATGTCCAGTATCGATGTCTGCCAGGATACAGCCTAGAGGGGGCAGCTGTGCTCACCTGCTACAGCCGGGACACGGGCACACCCAAGTGGAGCGATCGGGTCCCCAAATGCGCCT
Seq A exon
TAAAGTACGAGCCATGCCTGAACCCCGGCGTTCCTGAGAATGGCTACCAGACATTGTACAAGCATCATTACCAAGCGGGGGAGTCACTACGCTTCTTCTGCTATGAGGGCTTTGAGCTCATCGGCGAGGTCACCATCACCTGTGTACCTGGGCACCCCTCCCAGTGGACAAGCCAGCCCCCACTCTGCAAAG
Seq C2 exon
TGGCCTATGAGGAACTCCTGGACAACCGAAAACTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027098-'20-31,'20-29,21-31
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=0.000 C2=0.143
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.3)
A:
PF0008415=Sushi=WD(100=89.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGACTTGTGCTGACCCTGG
R:
CCAGTTTTCGGTTGTCCAGGA
Band lengths:
227-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]