DreEX6015601 @ danRer10
Exon Skipping
Gene
ENSDARG00000076052 | sez6l2
Description
seizure related 6 homolog (mouse)-like 2 [Source:ZFIN;Acc:ZDB-GENE-091204-189]
Coordinates
chr3:15092152-15096285:-
Coord C1 exon
chr3:15096091-15096285
Coord A exon
chr3:15092388-15092579
Coord C2 exon
chr3:15092152-15092190
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTCCCTCTTTTTCCTCACAGTAA
3' ss Score
9.86
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
TCCAGCAGTGTCCTGACCCAGGAGAAGTGGTCAATGGAGCTCGCTCTGTACATCCCGAGTCTGGTTTCGCTGTTGGAACGGTGGTACGCTTCACATGTAACCAGGGCTATCAGCTGGAGGGCCCGAGTCAGATATCCTGCCATGGCAGAGACACCGGAATGCCCAAGTGGAGCGACCGCAGCCCGAAGTGTGTCT
Seq A exon
TAAAATATGATCCATGCCCAAACCCGGGTGTGCCAGACAACGGCTACCAGACTCTGTACAAGCACAGTTACCAGGCCGGCGAGACACTGCGCTTCTTCTGCTATGAGGGCTACGAGCTCATTGGGGAAGTGATCATCAACTGTGTCCCAGGACACCCATCTCAGTGGAACAGCCCACCGCCCTTCTGTAAAG
Seq C2 exon
TGGCCTATGAAGGACTTCTGGATGATCATAAATTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076052-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.4)
A:
PF0008415=Sushi=WD(100=89.2),PF146101=DUF4448=PU(21.3=24.6)
C2:
PF146101=DUF4448=FE(17.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCAGTGTCCTGACCC
R:
CCTCCAATTTATGATCATCCAGAAGT
Band lengths:
234-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]