BtaEX6109670 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007955 | SEZ6L2
Description
Bos taurus seizure related 6 homolog (mouse)-like 2 (SEZ6L2), mRNA. [Source:RefSeq mRNA;Acc:NM_001045927]
Coordinates
chr25:26633416-26635268:+
Coord C1 exon
chr25:26633416-26633616
Coord A exon
chr25:26634075-26634213
Coord C2 exon
chr25:26635072-26635268
Length
139 bp
Sequences
Splice sites
3' ss Seq
TGACACCGTTTCTCCCCTAGCCA
3' ss Score
8.47
5' ss Seq
GATGTACGT
5' ss Score
6.45
Exon sequences
Seq C1 exon
CCTTTGAGGAAGATCGCTGCTTTGCCCCCTTCCTGGCACATGGCAACGTCACCACCACGGACCCTGAGTACCGCCCAGGGGCACTGGCCACCTTCTCGTGCCTCCCAGGATATGCCCTGGAGCCCCCTGGTCCCCCCAATGTCATCGAATGTGTGGATCCTACAGAACCCCACTGGAATGACACGGAGCCAGCCTGCAAGG
Seq A exon
CCATGTGTGGAGGGGAGCTGTCAGAGCCAGCTGGTGTGGTCCTCTCTCCGGATTGGCCCCAGAGCTATAGCCCTGGCCAAGACTGTGTGTGGGGTCTGCATGTCCAGGAAGAAAAACGCATCTTGCTCCAAGTTGAGAT
Seq C2 exon
CTTGAATGTGCGCGAAGGGGATATGCTGACGCTGTTCGATGGGGACGGTCCAAGTGCACGAGTCCTGGCCCAGCTGCGAGGGCCTCAACCGCGCCGCCGCCTCCTCTCCTCTGGGTCCGACCTCACGCTGCAGTTCCAGGCACCGCCCGGACCCCCCAACCCGGGCCTGGGCCAGGGTTTCGTGTTGCACTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007955-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=0.085 C2=0.358
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=88.2)
A:
PF0043115=CUB=PU(40.4=93.6)
C2:
PF0043115=CUB=PD(58.7=95.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGATCCTACAGAACCCCA
R:
TGAAGTGCAACACGAAACCCT
Band lengths:
244-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]