RnoEX0079970 @ rn6
Exon Skipping
Gene
ENSRNOG00000027098 | Sez6l2
Description
seizure related 6 homolog like 2 [Source:RGD Symbol;Acc:1565281]
Coordinates
chr1:198394796-198396492:+
Coord C1 exon
chr1:198394796-198394996
Coord A exon
chr1:198395409-198395547
Coord C2 exon
chr1:198396296-198396492
Length
139 bp
Sequences
Splice sites
3' ss Seq
ACCTGACACCTCTTCCCTAGCCA
3' ss Score
5.08
5' ss Seq
AATGTATGT
5' ss Score
5.87
Exon sequences
Seq C1 exon
CCTTTGAGGAGGATCGCTGCTTCCCGCCTTTCCTGGCACATGGCAATGTGACCACCACAGATCCTGAGTACCGCCCAGGGGCACTGGCCACCTTCTCATGCCTCCCAGGATATGCTCTGGAGCCACCAGGGCCCCCCAATGCTATTGAATGTGTGGATCCCACTGAACCCCACTGGAATGACACAGAGCCAGCCTGCAAGG
Seq A exon
CCATGTGTGGAGGAGAGCTGTCTGAGCCAGCTGGTGTGGTACTCTCTCCCGACTGGCCCCAGAGTTACAGTCCTGGCCAAGACTGCGTGTGGGGCCTGCACGTCCAGGAAGAGAAGCGCATCTTGCTCCAAGTTGAAAT
Seq C2 exon
CTTGAATGTTCGCGAAGGGGATATGCTAACACTGTTCGACGGTGATGGCCCGAGCGCTCGAGTCCTGGCCCAGCTGCGGGGGCCTCAGCCACGCCGCCGCCTCCTCTCCTCTGGACCTGATCTCACTCTGCAGTTTCAGGCACCCCCTGGGCCTCCAAATCCGGGCCTAGGCCAGGGTTTCGTGTTACACTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027098-'15-22,'15-21,16-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.262 A=0.106 C2=0.507
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=88.2)
A:
PF0043115=CUB=PU(40.4=93.6)
C2:
PF0043115=CUB=PD(58.7=95.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGCCTCCCAGGATATGCT
R:
GTGCCTGAAACTGCAGAGTGA
Band lengths:
249-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]