DreEX0065593 @ danRer10
Exon Skipping
Gene
ENSDARG00000076052 | sez6l2
Description
seizure related 6 homolog (mouse)-like 2 [Source:ZFIN;Acc:ZDB-GENE-091204-189]
Coordinates
chr3:15099640-15104002:-
Coord C1 exon
chr3:15103808-15104002
Coord A exon
chr3:15100696-15100834
Coord C2 exon
chr3:15099640-15099836
Length
139 bp
Sequences
Splice sites
3' ss Seq
CCTCTTTTCCCTATTGTCAGCTC
3' ss Score
7.22
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
CCTTTGATGGTGAACACTGTTATGAACCTTACCTGCCTCATGGGAACTTCAGCAGCAGTGACATCACCTTCCCACTGGGAACTGTGGTATCGTTTTCATGTGCTGCTGGATTTGTGATGGAGCAGGGCTCAGGAGTTATGGAGTGTTTGGATCCCAATGACCCTCACTGGAACGAAACTGAACCGGTCTGCAGAG
Seq A exon
CTCTGTGTGGCGGTGAGCTCACAGATCCAGTGGGAACAGTGTTGTCTCCCGACTGGCCACAGAGCTACTCTAAAGGGCAGGACTGTGTGTGGCAAATACACGTCAGCGAGGACAAGCGCATCGAGCTGGATGTGCAAAT
Seq C2 exon
TTTGAACATACGCCACAATGACGTTCTCACTCTGTTTGATGGCCATGATCTGATGTCGCACGTGATTGGTCAGTACATGGGCTCGAGAGAAAGGTTCAGGGTTGTATCGGGAGGTTCGGAGGTCACCATTCAGTTTCAGAGCGATCCCGATGACTCCACGTTTATACTGAGCCAAGGCTTTCTCATCCACTACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076052-'13-13,'13-12,14-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.021 C2=0.015
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.9)
A:
PF0043115=CUB=PU(40.4=93.6)
C2:
PF0043115=CUB=PD(58.7=95.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGAACTTCAGCAGCAGTG
R:
TGAACCTTTCTCTCGAGCCCA
Band lengths:
254-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]