MmuEX0041893 @ mm9
Exon Skipping
Gene
ENSMUSG00000030683 | Sez6l2
Description
seizure related 6 homolog like 2 [Source:MGI Symbol;Acc:MGI:2385295]
Coordinates
chr7:134105251-134106975:+
Coord C1 exon
chr7:134105251-134105451
Coord A exon
chr7:134105867-134106005
Coord C2 exon
chr7:134106779-134106975
Length
139 bp
Sequences
Splice sites
3' ss Seq
ACCTGATACCTCTTCCCTAGCCA
3' ss Score
5.33
5' ss Seq
AATGTATGT
5' ss Score
5.87
Exon sequences
Seq C1 exon
CCTTTGAGGAGGACCGCTGCTTCCCCCCGTTCCTGGCTCACGGCAATGTGACCACTACAGATCCTGAGTTCCACCCAGGAGCACTGGCCACCTTCTCATGCCTCCCAGGATATGCTCTGGAGCCACCAGGACCCCCCAATGCTATCGAATGTGTGGATCCCACCGAACCCCACTGGAACGACACAGAGCCAGCCTGCAAGG
Seq A exon
CCATGTGTGGAGGAGAGCTGTCTGAGCCAGCTGGTGTGGTACTCTCTCCCGACTGGCCCCAGAGTTACAGCCCTGGCCAAGACTGCGTGTGGGGCCTGCACGTCCAGGAAGAGAAGCGCATCTTGCTCCAAGTTGAAAT
Seq C2 exon
CTTGAATGTTCGCGAAGGGGATATGCTAACACTGTTCGACGGGGACGGTCCGAGCGCTCGAGTCCTGGCCCAGCTGCGAGGACCTCAGCCGCGCCGCCGCCTCCTCTCCTCTGGACCTGATCTCACTCTGCAGTTTCAGGCACCCCCTGGTCCCCCAAATCCGGGCCTAGGCCAGGGTTTCGTGTTACATTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030683-'15-21,'15-20,16-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.309 A=0.106 C2=0.507
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=88.2)
A:
PF0043115=CUB=PU(40.4=93.6)
C2:
PF0043115=CUB=PD(58.7=95.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGCCTCCCAGGATATGCT
R:
GTGCCTGAAACTGCAGAGTGA
Band lengths:
249-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: