BtaEX6110400 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N4Y6]
Coordinates
chr25:35077010-35077902:+
Coord C1 exon
chr25:35077010-35077127
Coord A exon
chr25:35077365-35077515
Coord C2 exon
chr25:35077839-35077902
Length
151 bp
Sequences
Splice sites
3' ss Seq
TCTCCTCGCCGCCCCTGCAGGGC
3' ss Score
9.95
5' ss Seq
CCAGTGAGG
5' ss Score
4.09
Exon sequences
Seq C1 exon
GGGCCACCTGGGCTCCTTGCAGCTGGAGGTGCGGCTGCGGGACGAGACGGTGCTGCCATCCAGCTGCTACCAGCCCCTGGTGCAGCTGCTGTGCCGAGAGGTGAAGCCGGGCACCCAG
Seq A exon
GGCCCAGGGCAGCTGATCTCACTCATTGAGGAGACGACCAGCACGGAGTGTCGCCAGGAGGTGGCCACCACCCTGCTCAAGCTCTTCCTGGGGCAGGGACTGGCCAAAGACTTCTTGGACCTGCTCTTTCAGCTGGAGCTGAGCCGCACCA
Seq C2 exon
GTGAGGCGAACACCCTGTTCCGGAGCAATTCTCTGGCCTCCAAGTCCATGGAGTCTTTTCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005448-'16-14,'16-13,17-14=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0061614=RasGAP=PU(6.8=25.5)
C2:
PF0061614=RasGAP=FE(11.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCTGGGCTCCTTGCAG
R:
TCAGAAAAGACTCCATGGACTTGG
Band lengths:
178-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]