RnoEX6063932 @ rn6
Exon Skipping
Gene
ENSRNOG00000001431 | Rasa4
Description
RAS p21 protein activator 4 [Source:RGD Symbol;Acc:1565457]
Coordinates
chr12:23607360-23608193:-
Coord C1 exon
chr12:23608076-23608193
Coord A exon
chr12:23607692-23607842
Coord C2 exon
chr12:23607360-23607424
Length
151 bp
Sequences
Splice sites
3' ss Seq
AGCACTACCCCTTTCTGCAGGGC
3' ss Score
7.34
5' ss Seq
CCAGTGAGG
5' ss Score
4.09
Exon sequences
Seq C1 exon
GGGCAACCTGGGCTCCTTGCAGTTGGAGGTGCGGCTGCGGGATGAGACAGTGCTGCCGTCTGTCTACTACCAGCCTCTGGTACAGCTGCTGTGCCAGGAGGTGAAGCTGGGCACCCAG
Seq A exon
GGCCCAGGACAGCTGATTCCTGTCATTGAGGAGACAACCAGTGCTGAGTGTCGCCAGGAAGTGGCCACCACCCTGCTTAAGCTCTTCCTGGGGCAGGGGCTGGCCAAGGACCTTCTGGACCTGCTCTTTCAGCTGGAGCTGGGCCGCACCA
Seq C2 exon
GTGAGGCCAACACCCTCTTCCGGAGCAATTCTCTGGCCTCAAAGTCCATGGAATCCTTTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001431-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0061614=RasGAP=PU(6.8=25.5)
C2:
PF0061614=RasGAP=FE(11.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCTGGGCTCCTTGCAG
R:
TCAGAAAGGATTCCATGGACTTTGA
Band lengths:
178-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]