DreEX6013876 @ danRer10
Exon Skipping
Gene
ENSDARG00000029372 | rasa4
Description
RAS p21 protein activator 4 [Source:ZFIN;Acc:ZDB-GENE-060526-349]
Coordinates
chr5:58687781-58691959:+
Coord C1 exon
chr5:58687781-58687880
Coord A exon
chr5:58691613-58691766
Coord C2 exon
chr5:58691895-58691959
Length
154 bp
Sequences
Splice sites
3' ss Seq
ATAATGACTGTTAATTATAGGGA
3' ss Score
4.65
5' ss Seq
CTAGTAAGC
5' ss Score
5.2
Exon sequences
Seq C1 exon
AGGTACTCTGGGCTCCCTGAGGCTGCATCTCCGGCTTCGAGACGAGGTTGTGTTGCCATCCAGCCATTACAAGCCACTCACAGAGCTACTCAGCCAGTCG
Seq A exon
GGAAACTGGCCTGATTTCATCATGCTGATTGATGAGACCACTACAGCGGAGAGCAGACAGGAAGTAGCTAATAATCTAGTAAAGCTGTTTTTGGGTCAAGGGCTTGTCAAGGAGTTCTTGGACGTTCTGTTCAAACTGGAGCTGGACAAGACTA
Seq C2 exon
CTGAACCCAACACACTCTTCCGCAGTAATTCATTAGCATCTAAGTCTATGGAATCCTTTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029372-'9-12,'9-11,11-12=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0061614=RasGAP=PU(6.8=25.0)
C2:
PF0061614=RasGAP=FE(11.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTACTCTGGGCTCCCTGA
R:
AAAGGATTCCATAGACTTAGATGCT
Band lengths:
159-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]