GgaEX6017119 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr19:4137407-4138086:-
Coord C1 exon
chr19:4137963-4138086
Coord A exon
chr19:4137728-4137881
Coord C2 exon
chr19:4137407-4137471
Length
154 bp
Sequences
Splice sites
3' ss Seq
ATGTCCCCGTGTCCCCGCAGGCC
3' ss Score
12.66
5' ss Seq
CCTGTAAGC
5' ss Score
3.69
Exon sequences
Seq C1 exon
GCGCCGGGGCAGCCTGGGCTCACTGCAGCTGCAAGTGAGGCTGCGGGATGAGACAGTGCTGCCCTCCCACTGCTACCAGCCCTTGGTCCAGCTGCTGTGCCAGGAGGTGAAGGCAGGGCACCAG
Seq A exon
GCCGGCGGGGTGCACCTGGTCACCCTCCTCGATGAAACCACCACGGCTGAGAGCCGGCAGGACGTCGCCGTCAACCTGGTGAAACTCTTCTTGGGCCAAGGGCTGGTGAAGGAGTTTCTGGACCTGCTCTTTGAACTGGAGCTGGCCAAGCCCT
Seq C2 exon
GTGAACCCAACACTTTGTTCCGGAGCAACTCCCTGGCCTCAAAGTCAATGGAGTCTTTCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001876-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0061614=RasGAP=PU(6.9=25.0)
C2:
PF0061614=RasGAP=FE(11.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCTCACTGCAGCTG
R:
GAAAGACTCCATTGACTTTGAGGC
Band lengths:
170-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]