BtaINT0000077 @ bosTau6
Intron Retention
Description
Bos taurus cytochrome P450, family 2, subfamily J (LOC521656), mRNA. [Source:RefSeq mRNA;Acc:NM_001038551]
Coordinates
chr3:86514359-86519705:+
Coord C1 exon
chr3:86514359-86514497
Coord A exon
chr3:86514498-86519197
Coord C2 exon
chr3:86519198-86519705
Length
4700 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
GTCATATTTTTGTCTTTTAGGAA
3' ss Score
11.47
Exon sequences
Seq C1 exon
GGCACCATGGTGCTGACCAACCTGACTGCACTGCACAGGGACCCCGCAGAGTGGGCCACCCCTGACACGTTCAATCCAGAGCATTTTCTGGAAAATGGACAGTTTAAGAAAAGGGAATCCTTTCTGCCTTTCTCAATAG
Seq A exon
GTGAGTAGCAAGAAATAGGTATGTGGGAACCCAGGACTCCTCTCTCTACCCTCGCCTACTCTTCTCCTTGTGATGCTTTGCTTTAATTGGAACAACTCCAGATAGCCCTGCCAAGCGTGACTCACTCTTGCTGTGGTTGCACCTCAAGATTCCCTGGGGTGAGCATCCCCAGGATTAATGCTGTTGCTTCCTAAGCCCTGGCTTGACTCTGATGGAGATTTCAGCTTCACATTGTTCTGTCCCTGCCAACACTGGGGATAGAAGCGTAGCCTCCTCCTGTTACCCACAAAGAAGGTTGGAACCTTTACCATCTGAGTAGAGTTTTAAGTGTTCCAAGATCTTTTTAGAGCCTCCCACTCACAAAAATGTAAAGTGAATTACTACAAAAGGGATGGGGGAGGTGCCAGTAAAGGAGCTGCTTGTCTGTCATTATGGGCGTCACAAGGGACTTGTGCCATGGACTTAAGTAGATGAGATTCTACTCTTTAAGATATTCCTGAAGAGGTCTTTTAAAATTTTGCCTTTTTAAACGCTAATAACCCCTTTACAAATATAGTTACATCATTCACACGATGCACAACCCGAAATGTATGAAAGAGAATGCAGGGAAACTCTCTCTCATGTTTCCAAGGCAGCCAGTTCCAGAAGTTCCGAAAGCTCCAAATATTTTAACTTATAACTGTGAAATGAGTAACAAAATTCTTCGTATGTACCAGATGATGAGTTATGTATTTTGTTGAGATCGTTTCAAATAATATCCCAGATCCTTAATTCTATAAATGTTTCTTGAGCACCTGTTATGTGTAAAGTATTCAGTCCTGAGGATATGACAAATGATTCAGTAGACAAAAATACCATGCAATTCTCCTGTAACCTTCCAAGGTTCAAATTTGAATCACCGCTTTGGGTATAAGGAAGATAACTGAAGTTTAGCAGGGTCAGCTATGGAATATACACTCATAAAAGTCATGGGGGCAGTCCTAGAATTGAGTGTTATTCATGTTTATCCAATACTAATGCCCGTGCCTCTTCCTAACAGTATCTCCTAAAATAATAACTAAATGCTACACTGAGTTGACATTCTGAAATTCATAGTAGTTTTCTTATCATTAATTTTCTGTGACAGTATCATTTTGCTGATCATGCCACAAAGGCACAGAGAGGAAGGGTCTGGAATTTGACCCCATGCTTAGCTTAGCTTAGGCATGATCCAGAGCCCAGGCTTCCCTGCTGTAGGATACTGTCCTGAGTGTATCTGAACTCATTCGATTAGATCTTTTGTGTCTTTCCTCTCCAGTTCTGTGCCACCTTTGCTCACATTGGGCAAGTCACTTTCTAATCTCAAAGCAGAGATGAGATGTAGGAAAACCTTCCAGTCTTCCTGTCTACAAGAGCTTCAGGTTTCCTATTACAGTACAAAGTTTTAGCTGTTTTAAGTGTTATAATTCTCCTGAAGTTGTTGTTGTTGTTGTTGTGAGAGTTGTAACACACCCTTCTAATTACAGATTTTATTTGCAAGGAAATTATTTTATTTAATATGTACAGCAATCCAGTTATTAACAGTTTGACAGGAAAGAAATCAGTATTTCCTTTCCCAAGGCATAGAAATTAGGATTTAGAGAAAGCTGTTTCTTACCCAAGGCCAGGTGCCCAAGGAATTGGCAGAAAACAGCCTAAGACTCATTTGTTGTTTTTTTAAATTTTTTTTGTAAAGCAGAGTTGATTTACAATATTGTGTTACTTTCAGTAGTAGAGCAAAGTGATTCAATTTTATATATATATACATATATATACACACACACACACACACACACACACACACACACACACATATATGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGATGGGGGAGCCTGGTGGCTGCCGTCTATGGGGTCACACAGAGTCGGACACGACTGAAGTGACTTAGCAGCATACACGTATATACACACACCTTTTTTTGTTGTTTTAGTTTTTTCCCTTACAAGATACTACAAAATATTGGTATACTTCCCTGAGCTATACAGTAGGTCTTCATTGGTTATGTATGAAGTTCTAATCTAGTGTGCCCCCTAACACAACTAGAATGTAACACATTTACTTACTTAAAAGCCCTTCCATTTTAAGATTCACCAAGTCCATGTCATATGTATCGATTGTTACACTGCTGCATTACAAAGGTGGTAAACTCAGTGACGTAAAGCAGTAAGTGTGCATCGTCGCCCGAAGCCTACAATCGAGCTGGGAGCTGCCTGATCTTAGCCGGGCTCTCTTGCCTGTGTAGGAGGTCAGGTGACTGAAGACTGACCTAGGACTAGCTCCGCTGGGTCAGTGGGGCTCTTTTCCAAGTTTCCTCCTCCAGCAAGCGAACCCCCGCTGGTATACATGCAGATGATAAGACCCAGGAGGGAGGAAAGCACACAGTGCCTCCTGAGAGCCAGGCTGGGAACTGGCGACCGTCACTCCCACTTCATTCCGGGGACCCACGCAGGTCACACTGTGAGCCCCAGTTCAAGGGAAAGGGAAATAGCACAGCTTTTATGGGAAGGGCTGTGGAATCACATTGCAGATGATGTGGGTACAGGTAAAGGGGGGAGATTGGAACAAGTGTTGCAATCAGGTAATATCCCTCTTTCTGCCTGGGAAGAACGAAATTCAGAGAAGGTACGCAACTTGGGGTTTTCCTCAGCTGTGGCAGAACGCAGCCTACCTAAATAGAGTAGGAAACGGAAGCCTGAAAAATGCTCTGAATCGAAAAGTCAACACTACTATTACGTTTTTCTCCCACCACACTCCCATCTGGGGCACAGTTGCTTTGACTCATTCTTGATCCAGCACTTTGTAAAGAAAGCTTCCTTGAAGAATGGGGTGTGGAGAGCTCCCTCCCTTCTCTTGGAGAGGCGATCAGGTGTGGAATTAGAACACACACACAGTCAGGGCAGATGGCAGAGGTATCATTGCAAACATATTTTTTTCTTCATTTAAGTGTTTCCCTCTTGATGCAGCAAAGCAGCAGACATCTTCATGAAGACAAGAGACTGAGTCCTCATTTTTCAAAGTAATCACTGGATCATAGGAGACAAAAAGAGAAAGACTTTTTTTCAGAAACCCTAGACCAATTCTCTCATTCTTAGTGAGGTGATTGATCTAGTTATTTAGAGGGAGCACCAAGGAGAAGGTCCACATTTCCCGTGGTCCAGAATGAAGTTGTAGAATCAAGTGGCCCTCCTTTTCATGATTTTAAAATCAAATTCATATCTCCTGTATTACTCATATCCTTGTCCAGCCACATAGTGTAGTTAGGATATTATTTTACAAGTTTGACAACTGAAAATGGTTTAGGTTGGTGAGAATATTTACTCATAGCCCAGAACTGGTTACTGGTTACCAACACTGTAAATCTGGATCCTGACTCTGTGGATCCAGTTTTGTCACAAATCTGGATTACTTGAGGATAATTTTCAGTATTTACAATACAGCTGGTTTGGTACCATTTGAACAAATTTCTTCCTCTGCTGCATTTTTAACTGATGTCCTCATTGTTCTATTAGTGATGCGTAAAGAGATCAGAGAGAGGGGAACAGAGATGATTAGAAACTGCTGGTGGGAAACACAGACACACAGGCACAAAATCATATAAAAAGGACATAATTCTGAAGCATATCTTGATTTATTAAACACATTTGCAGGCATTCTCTAATCTTATTTTCAACAACTGCTTACAGAGGCAGAGGACAAAATTGAGGCATACCCCTACAATAACTATTTTTGAAGAATATTTCACGACATGGGGAAAAACCAAAGTAACAATAGCAATGCCCAGAATTAACTACAGAGAGTAATCCCAGGGATGGGTGTGCAGGAGAATCTTTACAAAGACAGTGAGGAAATTTGTCAAATGTTAACAAGGGTTTTTTGTCTGGATTATGGGATTACAAACATCTTTTATATCTTTATACTTCTCAGACTTTTTTTTTTTCATTTTTGCAATGAACATGTATTAATTAGTGAGAAGGTAAATTATTAAAACACCCACAAGAGAGATAATGGAGACCCGAGTAGGGTGTTGTAGCCCAAGTGGGGAGGAGGGCATCATGAAGGGAGGGGCTGGGGGAAGCCTGGAAGAGATGGTGCAGAGGTGGGCTGAGACGGGGTCGGCCCTGCACGGGCAGCCCTGGCAGGGAGATGCCCAGTCCTGATGGAGGGAAACGTGATGTAGAGAGAAGATGCCTCATATTTGAGAAGCCTTGATCTGATGTTCACTTTCTTATCCTTCTCAACAGTTGTTTTTTATAATGATTGAAAAATATTAAAACAGAATTTTTCTTTTTGTCTGCTTTTGTCATCATCATTTCCTGATGGATTTTTGAACGACTTTAGGCTAGACGCTGTTTGTAGGTCAGCCCAGCCCCTCTGCGCTCTGTCCGCAGCCTGCACCTGCACCCTGTACCTTACCATTCTGACCCCTGAAGGCACTGAGCTGTGCGATTGTAGATTCACTCAACTGGGCTTAGGTTTACAAGGTGGTTGCCATGAAATAAGCCAGCTGCATAAAGGCCAGGGCCTATCAGGCTCTCACTTTGCTAAGTTTTTTAAGATGTGGTACAAGATTTCAGTCCTTGCAAGACACAGTCACCACCTGAGCAGGTAACTCACGTCATATTTTTGTCTTTTAG
Seq C2 exon
GAAAGCGGATGTGCCTTGGAGAACAATTGGCCAGGACAGAGTTGTTTATTTTCTTTACTTCACTTCTGCAAAAATTTACCTTCAGGCCTCCAGAGAATGAGAAGCTGAGCCTAAAGTTTAGAGAAAGCCTGACCAGCTCCCCAGCCAGCTACCGCCTCTGTGCTATTCCTCGGGCCTGAAATTGTCCAGAGAGGGAGGAGAAGGAAAGAAAGAAGAATGGGCCTGTTCCCCTCAAGATAGAGCACATGCTCAGGAGTGAGGGAGCAGCACTCAGTGCCTCTAGGACAGGTCACAGGAACTGGACTCAGAGGAAACTGAATCCAAACCCCAGCTTAACCGTCTCCAGTGGGGCCTTGGGCAAATCAGTTATGTTGTGAGTGATTTCATTTTCATCTGGGAAATAGAAGGTGGACAATGATTTCTTCTCTAAAGCAAAAACTAATGCAAAGATCAAAGGAAATTAAGGGCTTTAAATGGCTTGGAAACCATAAAGCACATCATAAAATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000258:ENSBTAT00000013230:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.1=100)
A:
NA
C2:
PF0006717=p450=PD(11.9=90.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]