BtaINT0001025 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N4Y6]
Coordinates
chr25:35077010-35077515:+
Coord C1 exon
chr25:35077010-35077127
Coord A exon
chr25:35077128-35077364
Coord C2 exon
chr25:35077365-35077515
Length
237 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCTCCTCGCCGCCCCTGCAGGGC
3' ss Score
9.95
Exon sequences
Seq C1 exon
GGGCCACCTGGGCTCCTTGCAGCTGGAGGTGCGGCTGCGGGACGAGACGGTGCTGCCATCCAGCTGCTACCAGCCCCTGGTGCAGCTGCTGTGCCGAGAGGTGAAGCCGGGCACCCAG
Seq A exon
GTGAGGGTCCCCCGGGGAAGGCGGGAGGTTCAGGGACCCTGGGTGTGTCCTCCCCGTCCTTCTAAACATGCTCTGAAGAGCGAAGATCTGAGTTGTCAGAACCACCCAGTGCCCCGGGCCCCTCCGTCCCTTGGGACAGTGGGCCCCCTTCCCCGTGGTCCTCTGCGGCCCTCAGAGGAAAGGGTTGGGGTTCCCCTGTGTGTCCTGCAGCCCCGCCTCTCCTCGCCGCCCCTGCAG
Seq C2 exon
GGCCCAGGGCAGCTGATCTCACTCATTGAGGAGACGACCAGCACGGAGTGTCGCCAGGAGGTGGCCACCACCCTGCTCAAGCTCTTCCTGGGGCAGGGACTGGCCAAAGACTTCTTGGACCTGCTCTTTCAGCTGGAGCTGAGCCGCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005448:ENSBTAT00000007169:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061614=RasGAP=PU(6.8=25.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGGGCTCCTTGCAG
R:
TGAAAGAGCAGGTCCAAGAAGT
Band lengths:
245-482
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]