GgaINT0129972 @ galGal3
Intron Retention
Description
NA
Coordinates
chr19:4137728-4138086:-
Coord C1 exon
chr19:4137963-4138086
Coord A exon
chr19:4137882-4137962
Coord C2 exon
chr19:4137728-4137881
Length
81 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ATGTCCCCGTGTCCCCGCAGGCC
3' ss Score
12.66
Exon sequences
Seq C1 exon
GCGCCGGGGCAGCCTGGGCTCACTGCAGCTGCAAGTGAGGCTGCGGGATGAGACAGTGCTGCCCTCCCACTGCTACCAGCCCTTGGTCCAGCTGCTGTGCCAGGAGGTGAAGGCAGGGCACCAG
Seq A exon
GTGAGCTCCCTGCAGAGCCCCAACGGGACGTGGTCGTGGTGCCCGCTGCCACTGTGCCACCATGTCCCCGTGTCCCCGCAG
Seq C2 exon
GCCGGCGGGGTGCACCTGGTCACCCTCCTCGATGAAACCACCACGGCTGAGAGCCGGCAGGACGTCGCCGTCAACCTGGTGAAACTCTTCTTGGGCCAAGGGCTGGTGAAGGAGTTTCTGGACCTGCTCTTTGAACTGGAGCTGGCCAAGCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001876:ENSGALT00000002911:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061614=RasGAP=PU(6.9=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGACAGTGCTGCCCTC
R:
CCCTTGGCCCAAGAAGAGTTT
Band lengths:
180-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]