RnoINT0124477 @ rn6
Intron Retention
Gene
ENSRNOG00000001431 | Rasa4
Description
RAS p21 protein activator 4 [Source:RGD Symbol;Acc:1565457]
Coordinates
chr12:23607692-23608193:-
Coord C1 exon
chr12:23608076-23608193
Coord A exon
chr12:23607843-23608075
Coord C2 exon
chr12:23607692-23607842
Length
233 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AGCACTACCCCTTTCTGCAGGGC
3' ss Score
7.34
Exon sequences
Seq C1 exon
GGGCAACCTGGGCTCCTTGCAGTTGGAGGTGCGGCTGCGGGATGAGACAGTGCTGCCGTCTGTCTACTACCAGCCTCTGGTACAGCTGCTGTGCCAGGAGGTGAAGCTGGGCACCCAG
Seq A exon
GTGAGGAGACCCTGGAGGAGACCGTGGGGGAGCATCCACGGATAGATGAGCAGCTCGCCTGTCCCGAATCCATTCTACAGAGCAATAAACTGACTCCGGGGGCTGGGAGAACACTAACCAACTATCCAGTGGGCCCCACCCTCTGCCCAAACAACCTTCCCATGATGCTCTGGGGTCTTAACCCTGGGGAGGTTGAGTTTCCCTGTGGCTCTGAGCACTACCCCTTTCTGCAG
Seq C2 exon
GGCCCAGGACAGCTGATTCCTGTCATTGAGGAGACAACCAGTGCTGAGTGTCGCCAGGAAGTGGCCACCACCCTGCTTAAGCTCTTCCTGGGGCAGGGGCTGGCCAAGGACCTTCTGGACCTGCTCTTTCAGCTGGAGCTGGGCCGCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001431:ENSRNOT00000001943:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061614=RasGAP=PU(6.8=25.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTGGGCTCCTTGCAGTT
R:
TGAAAGAGCAGGTCCAGAAGGT
Band lengths:
245-478
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]