BtaINT0001028 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N4Y6]
Coordinates
chr25:35078582-35079142:+
Coord C1 exon
chr25:35078582-35078774
Coord A exon
chr25:35078775-35079004
Coord C2 exon
chr25:35079005-35079142
Length
230 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGC
5' ss Score
7.52
3' ss Seq
ACTCTCTCGCGCCCCTCCAGAAC
3' ss Score
9.17
Exon sequences
Seq C1 exon
GTGCTCTGGACTGCACCGCCCGCAGACCGAGGCCGAGGTGCTGGAGCAGAGCGTGCAGACGCTGTGCGCCCACCTGGGGGCGCTGCTGAGCGCACTCAGCCGCTCGGTTCGCGCGTGCCCCGCGGTGGTCCGGGCCACTTTCCGCCAGCTCTTCCGGCGCGTGCGCGAGCGCTTCCCCAGCGCCCAGGACGAG
Seq A exon
GTGCGCCCTCTGTCGGTGGGGCTGGAAGGAGGGGAGAAAGTGGTGGGAAAAGAAGGGGCGGGTGTCTCAGGGCCTGGTAGGAAGGGGCCTGATTGATGGTTAGAAGCCCAGGTTGGGGCCGGGGTCAGGAAGATCACGGGAGCTAGGGAGAGAGTCCCAAAGGGAAGGGAGCTGTCAAAAGAGCCCAGGCCTCGCAGAGTCCAGCCCCCCACTCTCTCGCGCCCCTCCAG
Seq C2 exon
AACGTGCCCTTCATCGCCGTCACCAGCTTCCTGTGCCTGCGCTTTGTCTCTCCTGCCATCCTGGCGCCCAAGCTCTTCCACCTGCGAGAACGGCACGCGGACGCCCGCACCAGCCGCACCCTGCTCCTGCTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005448:ENSBTAT00000007169:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(33.7=100)
A:
NA
C2:
PF0061614=RasGAP=FE(23.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCGAGGTGCTGGAG
R:
CTTGGCCAGCAGGAGCAG
Band lengths:
303-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]