RnoINT0124462 @ rn6
Intron Retention
Gene
ENSRNOG00000001431 | Rasa4
Description
RAS p21 protein activator 4 [Source:RGD Symbol;Acc:1565457]
Coordinates
chr12:23606401-23606831:-
Coord C1 exon
chr12:23606639-23606831
Coord A exon
chr12:23606539-23606638
Coord C2 exon
chr12:23606401-23606538
Length
100 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCGC
5' ss Score
5.28
3' ss Seq
ACTTCTTTGCACCCTCCCAGAAC
3' ss Score
7.82
Exon sequences
Seq C1 exon
GTGCTCTGGGCTGCACCGCCCACAGACGGAGGCTGAAGTGTTAGAGCAGAGCGCACAGACGCTGCGTGCCCACTTGGTGGCGCTGCTGAGCGCCATATGCCGCTCGGTTCGCACCTGTCCAGCTGTGGTCCGCGCCACTTTTCGGCAGCTGTTCAGGCGCGTGCGGGAGCGCTTCCCCAGCGCCCAGCATCAG
Seq A exon
GTTCGCCCCGCGTCGGCAAAGCTGAAGGCTGGGGGAGGGAGGGAATCCTGCAGAACTGATATGCTTCTTGACCAGTCTCTACTTCTTTGCACCCTCCCAG
Seq C2 exon
AACGTACCATTCATCGCGGTCACCAGCTTCCTGTGCCTGCGCTTCTTCTCTCCCGCCATCCTGTCGCCCAAGCTCTTCCACCTGCGAGAGCGGCATGCAGATGCTCGCACCAGTCGCACACTACTTCTGCTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001431:ENSRNOT00000001943:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(33.7=100)
A:
NA
C2:
PF0061614=RasGAP=FE(23.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGTTAGAGCAGAGCGCAC
R:
CTCGCAGGTGGAAGAGCTTG
Band lengths:
246-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]