GgaINT0129976 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF56]
Coordinates
chr19:4170262-4170862:-
Coord C1 exon
chr19:4170676-4170862
Coord A exon
chr19:4170400-4170675
Coord C2 exon
chr19:4170262-4170399
Length
276 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
CGTGCCCCCCGCGGCCGCAGCAC
3' ss Score
6.19
Exon sequences
Seq C1 exon
GTGCTCGGGGCTGCACCGGGTTCAGACAGAGAGTGAGGTGATGGAGCAGGGCCGCCAGCTCCTCCAGTCCTACCTTGGGGAGCTGCTGGATGCCATCGGCAAGTCAGCTCCTACCTGTCCTCCTGTCATCCGTGCCGCTTTCCGGCAGCTCTTCCAGCGCGTTGGGGAGCGCTTCCCCCAGCATCAG
Seq A exon
GTCAGGTCCAAACCCAGCGGTGGGGATGGAGGAGGAATGGGGCGCACTCGGTGTTGCACCGTGCCATGAAGAAGCTGTGGGTGTCCCATCCCTGGAGGTGCCCGAGGCCGGGCTGCACGGGGGGCCCTGGGCAGCTCGAGCTGGTGGGGGGCAACCAGCCCGCGGCAGGGGGTTGGAACTGGGCGGGCTGCGAGGTTCACACCCCCCTGAAGCATCACGAGGTATGGCACCCTTGGGGATGGACCCTCACACCTCTCGTGCCCCCCGCGGCCGCAG
Seq C2 exon
CACACGCAGTTCGTGGCCGTCACCAGCTTCCTGTGCCTCCGCTTCTTCTCGCCGGCCATCATGACCCCCAAACTCTTCCACCTGCGGGACACGCACGCCGACGCGCGCACCGGCCGCACACTGCTGCTGCTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001876:ENSGALT00000002911:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(33.0=100)
A:
NA
C2:
PF0061614=RasGAP=FE(23.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTGAGGTGATGGAGCAGG
R:
CTTGGCCAGCAGCAGCAG
Band lengths:
296-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]