BtaINT0001029 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N4Y6]
Coordinates
chr25:35079005-35080106:+
Coord C1 exon
chr25:35079005-35079142
Coord A exon
chr25:35079143-35079961
Coord C2 exon
chr25:35079962-35080106
Length
819 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
3' ss Seq
TCCTGCTGTCGAACCCCTAGGCG
3' ss Score
7.62
Exon sequences
Seq C1 exon
AACGTGCCCTTCATCGCCGTCACCAGCTTCCTGTGCCTGCGCTTTGTCTCTCCTGCCATCCTGGCGCCCAAGCTCTTCCACCTGCGAGAACGGCACGCGGACGCCCGCACCAGCCGCACCCTGCTCCTGCTGGCCAAG
Seq A exon
GTGCGGGTCTGCGGACCCCAGCGGAAGATGCCCAGCTGGGTTCCCCACTGTGTTTCACACTGGCTCCAGGAACGCCTTGTGACAGGCCGCCGGGACCCTCCTGTGGCGCTGCACATCATAGTTTTCATAGCTTTCTCATGGTCGCCCAGTCTCATGATTAAGGGAACAAGTCTACGAGCTGGAGGGTGCCCAAGGCCTGGTCGCACCGCCTGTTGGGAGAACCGAGGCCTTCTAACTCTCAGATCTACGGACTCCCAGGCTGCCCTTATCTCCCTGGCACCAGGCTGGGGCCAGGGTACCCAGTGGAGCAAAGTCTGCTATGAAATCCACAGAAGGTCAATAGACTGGGCCCGAGTAGTTCCTAACTGTGGACTTCCCTGGTGGCTCAGATGGTAAAGCGTCTTGCCTACAATGTGGGAGACCGGGGTTCGATCCCTGGGTCGGGAAGATCTCCTGGAGAAGGAAATGGCAACTCACTCCAGTACTCTTGCCTGGAAAATCCCATGGAAACAGGAGTCTGGTGGACTGCAGTCCATGGGGTCCCAAAAAGTCGGACACGACTGAGCAACTTCACTTTCACTTTCAGTCCCAACTATAAGTTCCCTGAAGTCCGCAAACTGTGACCCGTGCCCCGCCCCTGCCCCGCTCCGGTACCCAGTGGGATAGAGTGGGTCCTTGAGCAGAGCCTGGGTCGCCTTCTGCCTCCATTTCTACAGTGGGAGTAGCACAGACTGGGTGCGGGGGGGAGGGGCCGGGAGTGGCCGTCGCCTGGCGTCTGACTCTAGCAGAGTCTGGCCTTTCCTGCTGTCGAACCCCTAG
Seq C2 exon
GCGGTCCAGAATGTGGGCAACATGGACACGCCAGCTTCCAGGGCTAAGGAGGCTTGGATGGAACCGCTGCAGCCCACGGTGCGCCAGGGCGTGGCCCAGCTGAAGGACTTCATCACCAAGCTGGTGGACATCCAGGAGAAAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005448:ENSBTAT00000007169:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.184
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(23.7=100)
A:
NA
C2:
PF0061614=RasGAP=PD(3.2=12.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGTGCCCTTCATCGCC
R:
TTCTCCTGGATGTCCACCAGC
Band lengths:
278-1097
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]