GgaINT0129977 @ galGal3
Intron Retention
Description
NA
Coordinates
chr19:4136057-4136578:-
Coord C1 exon
chr19:4136441-4136578
Coord A exon
chr19:4136372-4136440
Coord C2 exon
chr19:4136057-4136371
Length
69 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
CACCACCCCGCGGTCTGCAGGCT
3' ss Score
5.49
Exon sequences
Seq C1 exon
CACACGCAGTTCGTGGCCGTCACCAGCTTCCTGTGCCTCCGCTTCTTCTCGCCGGCCATCATGACCCCCAAACTCTTCCACCTGCGGGACACGCACGCCGACGCGCGCACCGGCCGCACACTGCTGCTGCTGGCCAAG
Seq A exon
GTGGGACGTGGGGGCAGCGGGGAAAACGTGGCGCCGGGAGCAATGACTCCACCACCCCGCGGTCTGCAG
Seq C2 exon
GCTGTGCAGATGGTGGGCAACATGGAGCCAGCGGCAGGGCGGGCCAAGGAGGAATGGCTGGCCCCGCTACAACCCGCCCTGCAGCACGGAGCCTCCCGCATGAGGGCCTTCATCACCCGGCTGGTGGGCACGGAGGAGGAGGAGGAGGGCGGAGAGGGGTGGCCGTGCGCCCCCCGCGCTGCCGTGGTGAAGGAGGGGCTGCTCTTTGTCCACAAGACGCGGGGCAAAGGGCCGCTGCTTGCCTCCGCCTCCAAGAAGCTGCACTTCTGCCTCACCGGAGAGGCCCTCAGCTTCGCCAAGAGCCCCGGGGCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001876:ENSGALT00000002911:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.076
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(23.9=100)
A:
NA
C2:
PF0061614=RasGAP=PD(3.2=5.7),PF0016924=PH=PU(48.3=41.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCCTCCGCTTCTTCTC
R:
GCCAGCCATTCCTCCTTGG
Band lengths:
170-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]