RnoINT0124463 @ rn6
Intron Retention
Gene
ENSRNOG00000001431 | Rasa4
Description
RAS p21 protein activator 4 [Source:RGD Symbol;Acc:1565457]
Coordinates
chr12:23605360-23606538:-
Coord C1 exon
chr12:23606401-23606538
Coord A exon
chr12:23605505-23606400
Coord C2 exon
chr12:23605360-23605504
Length
896 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
3' ss Seq
ATTCTTACTGTCACCCCTAGGCG
3' ss Score
9.01
Exon sequences
Seq C1 exon
AACGTACCATTCATCGCGGTCACCAGCTTCCTGTGCCTGCGCTTCTTCTCTCCCGCCATCCTGTCGCCCAAGCTCTTCCACCTGCGAGAGCGGCATGCAGATGCTCGCACCAGTCGCACACTACTTCTGCTGGCCAAG
Seq A exon
GTGCGGGCCTGCAGATTGGGACGGAAAGGGCAGTTAGGTTGCAAAGGGACCCTGGCAGGCTCTGCAAGTCGCACCAGTTGGCACTAGGAAGGCCTTGCAGGCCGGCCACTGATCCTCTATGGCACCGTACTGCAGTTTAAAAGCATTCTCATGGGGTTTGGGGATTTAGCTCAGTGGCAGAGCGCATGCCTAGCAAACGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAAAGGAAAAAAAAGAAAGAAGAAAAAAAAGCATTCTCATGATTACTTCTTGAGAGCCCCATCCACACATAGGGAGACACAGAAAGCCCAAGCCTGTCTAGTGAACTGGAATCGCTCCAGTTTTAATCTTATTCCCAGCATTGCAGAGGTCTGATGGTAGGATGAAACTTTCAGGGCCAGCAAGATGGCTCAGTAGGTAACGGCACTTGCTGCCAAGCCTAGTGACCTGAGGTCCATCCTTGGAGCTCCTTGATGGAAGGAGAAAACCAACTCCCGAAAATTGGCATCCGAGTTCCTCACATGCTCAGGCAAGCCCCAACATACACACAATGATAATATAATTAAACAGACTTGCAGAAAAAGCCGAAATGTTGATCCCAAGTTATCAGTTGTCCAAAGACTCAAAATGCTGTGATCCATGCATCCCGGGTTTCCCTATGGGACCGCGTAAGGTAACCTCTCCTCAGCTTCTATCTCTAGGTTGAACTAGGCAGCCATGGATGAGCTGTTGTCTCCCCCAAATCTCTGTCATTTTTTTTTTCCTTTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCAATCTCTGTCATTCTTACTGTCACCCCTAG
Seq C2 exon
GCGGTCCAGAACATAGGCAATATGGACACACCGGTCTCCAGGGCCAAAGAGTCGTGGATGGAACCACTACAGCCTACTGTGCGCCAGGGTGTGGTGCAGCTGAAGGACTTCATTACGAAGCTCGTGGACATAGAAGAAAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001431:ENSRNOT00000001943:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.163
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(23.7=100)
A:
NA
C2:
PF0061614=RasGAP=PD(3.2=12.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGTACCATTCATCGCGGTC
R:
CCTTTTCTTCTATGTCCACGAGCT
Band lengths:
280-1176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]