BtaINT0001035 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N4Y6]
Coordinates
chr25:35083906-35085983:+
Coord C1 exon
chr25:35083906-35084026
Coord A exon
chr25:35084027-35085918
Coord C2 exon
chr25:35085919-35085983
Length
1892 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
3' ss Seq
ACCCTGTCCTCTCCCCCCAGGGA
3' ss Score
13.23
Exon sequences
Seq C1 exon
ATCTGGGCTGCAACAAGACGCGGTCCTGGGTGACCCTGCAGGAGTGGAATGACCCTCTCGACCACGACCTAGAGGCTCAGCTCATCTACCGGCACCTGCTGGGTGTGGAAGCTGCATTGCG
Seq A exon
GTAAGGAGGCCCATTCGGGGGCAGCGAGGCCCACGGGCAGAGCCTGGGCAGCCCCCAGAGATGTGCTGGGGGCCGGGGTGGCCAGAGCCAGGACCGGGCTCAGGGCTCCTCTACGGTGGCTGTTCTCTTCCCTCCTGATCTAGCCCCCACACCTTCCTGGCTAGGGCACCCACGCCTGGGGAGGGCAGTGTGCCTGGATCTCTGCAGCATGAGGCTGGCTGTCTTTTGGATGAAGGTGCAAAGGGCTGTGGAAGCCCCAGGGTCAGGCTGTGGTTGATTTCCGCCCCCTCATCTGCCAAGCACTTCTATGGGGCCCTCGGAGCACCGGGACTGCCCTCAGCCAACTCACTTAATTCAGTGGTTCTCAGCCCTGGCTCTGGCTTATTTTAGTTTTATTTTTGTACTTTATTTTTTAAAATATTTTTCACTGTGCTGGGTCTTCATTGCCTTGCAGGCTTTTCTCTAGTTGCAGTGAGTGGAGGCTACGCTCTAATTGCATCATGAGGGCTTCTCACTGCGGAGGCTTCTCTTGTTGCGGAGCACAGACCCTAGGGCCTCTAGCCTTCAGCAGTTGTGGCTCCCAGGCTCTAGAGCAGAGGCTCAATAGTGTGGCACACGGACTCAGTTGCTCCGAGGCATGTGCGACCAGGGATCGAACCCATGTCTTCTGCTTTGGCAGGCGGATTACTTACCCCTGAGCCACCAGGGAAGCCCCTGGCTCCAGCTTGGAAAACATGGGGTGCTTTTTAAAAACCACCTTTTGCAGCTACTGAAACAGGTGGATTCTTAGCATCCCCCATTTAAGCCAGGAAGCAGCAGAGCAAAGATTTGAACCCAACCCACCTGGGGCTCAGGTGAGACCAGTGCCCAGGCTCTTAACCAGCACAGCCTGCCTTGAGGGCCTCCCCACCTCCGGAGCCTCTGACCAGACCCGGCCCATTGCAGCCTGCTGCCCAGAACTTCTGCCCCACCAGGAACTCCAGCCTCTGGCCCGACCACCTGTCCACGGCCCCCTGCTGCGTTAATTTCCTGCAGCTGCTGAGGCAGATTATCATACATTTGTTTGCTTAAATAGCACAGATTTCTCTTCTTCTAGTAAATGTTGAAGAAGCAAATGAGCAGAGGAGTAAGGGACCAGACTGACCCCTTGGGGTCACCTGGGGCAGCTGACGGGGAGGAGCTTGTTAGGCCTCAGCAGAGGGACATCTCTCCCAGAATAGACCCGGGAGACAGTCAAAGGGCTGAGCCCATAGAATTCCTCAATAAGGGGCACAAGGTCTGCACGGAGGCTGCTCACCTTCCCTCTGTGTAAGTGCACAGAGGATTGTACTTGAGGGGCCTGGGGTGCCATTGGTGAACGCCGGTCAGGAGCCACGCTTGAAACAGCATTCTCAGGACTTCCTGGTGGACTAGTGGTTAAGACCCCGTGATTCCAGTGCAGGGGGTGCAGGTTTGACCCTAGGTCTGGAAACTAGGATCCTACATGCTGTGCAGTGTGGCCAGAAAGAAAGAAAAAAATCACTGTCTCCTGTTTCCAAAAGAAAGAAACTCATCCTGTGGGCAGTTAACACTAGGGGATGTTCAGGTTCCGCTTGGCCCTCTTCCCAAGGGCCCCTCCAAAACAGGAGCAACACGATTCAACTTTGGTTTCCAAACTGCCCTTGCGGGGGTGGTGGGGGGTGAGGGGAGAGGGGGGACCAAGGGAGGGGGCTGGAAGCTGGGACGAGGAAGGTGAGTGGGGGCCAGCTGAGACCTGGGCCCGTATCTCTGCCTGTAGATTGGAAAAGTCAGCCCCCTGCCCCCAGGACCCCCGCCAGCTCAGGAGGCCCAGCTGGGGTCACCCTGGGTCCTGTGGGGACATGGGAGCCTCACACCCTGTCCTCTCCCCCCAG
Seq C2 exon
GGAGAAGCACCGACAGCTGAGCACGGGCCCAGAGGCAGGCCGCGGGCCGACGGGCCCTGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005448:ENSBTAT00000007169:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.870
Domain overlap (PFAM):
C1:
PF0077914=BTK=PD(28.1=22.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]